Variant report

Variant	rs5753817
Chromosome Location	chr22:32313727-32313728
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:32312284..32314949-chr22:32339290..32342237,2	K562	blood:
2	chr22:32311744..32314399-chr22:32317184..32320074,3	K562	blood:
3	chr22:32306386..32308141-chr22:32313194..32316126,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128254	Chromatin interaction
ENSG00000128245	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11703587	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11703779	0.87[CEU][hapmap];0.83[ASN][1000 genomes]
rs2015580	0.82[CEU][hapmap]
rs3213524	0.81[YRI][hapmap]
rs3788436	0.81[YRI][hapmap]
rs4820994	0.87[CEU][hapmap]
rs4820996	0.91[CEU][hapmap];0.83[ASN][1000 genomes]
rs4820997	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4820998	0.83[ASN][1000 genomes]
rs4820999	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5749339	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5753816	0.87[CEU][hapmap];0.83[ASN][1000 genomes]
rs5753818	0.91[CEU][hapmap];0.83[ASN][1000 genomes]
rs5753820	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5994451	0.91[CEU][hapmap];0.83[ASN][1000 genomes]
rs5998168	0.88[ASN][1000 genomes]
rs5998170	0.86[JPT][hapmap];0.82[YRI][hapmap]
rs5998172	0.86[JPT][hapmap]
rs5998176	0.83[ASN][1000 genomes]
rs9619241	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32276000-32315200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr22:32281000-32314800	Weak transcription	Right Atrium	heart
3	chr22:32295800-32314600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr22:32297800-32314800	Weak transcription	Brain Substantia Nigra	brain
5	chr22:32298200-32314400	Weak transcription	Fetal Brain Male	brain
6	chr22:32300200-32314600	Weak transcription	Psoas Muscle	Psoas
7	chr22:32302000-32324800	Weak transcription	Fetal Thymus	thymus
8	chr22:32302400-32322600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr22:32303000-32314600	Weak transcription	Right Ventricle	heart
10	chr22:32303200-32315000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr22:32303200-32318400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr22:32303400-32314600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr22:32304000-32314600	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr22:32304000-32314800	Weak transcription	Brain Angular Gyrus	brain
15	chr22:32304200-32314400	Weak transcription	Brain Hippocampus Middle	brain
16	chr22:32304200-32314600	Weak transcription	Brain Cingulate Gyrus	brain
17	chr22:32304200-32314600	Weak transcription	Left Ventricle	heart
18	chr22:32304200-32316400	Weak transcription	Esophagus	oesophagus
19	chr22:32304400-32314800	Weak transcription	Brain Anterior Caudate	brain
20	chr22:32304400-32314800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr22:32304400-32318000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr22:32304400-32319000	Weak transcription	Fetal Lung	lung
23	chr22:32304400-32339600	Weak transcription	Brain Germinal Matrix	brain
24	chr22:32304600-32314400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr22:32305200-32321600	Weak transcription	Fetal Brain Female	brain
26	chr22:32305600-32314600	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr22:32306600-32314600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr22:32306800-32318000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr22:32306800-32318600	Weak transcription	Primary T cells from cord blood	blood
30	chr22:32307600-32318600	Weak transcription	Liver	Liver
31	chr22:32308200-32314800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr22:32308400-32314800	Weak transcription	Lung	lung
33	chr22:32308800-32314800	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr22:32310200-32315200	Enhancers	Placenta	Placenta
35	chr22:32310400-32318400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr22:32310600-32314200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr22:32311600-32320000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr22:32311800-32315000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr22:32312000-32315800	Weak transcription	K562	blood
40	chr22:32312400-32315000	Weak transcription	Fetal Intestine Small	intestine
41	chr22:32312400-32315400	Enhancers	Fetal Muscle Leg	muscle
42	chr22:32312600-32314200	Enhancers	Primary B cells from peripheral blood	blood
43	chr22:32312800-32315400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
44	chr22:32313000-32313800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
45	chr22:32313000-32313800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
46	chr22:32313000-32313800	Enhancers	Spleen	Spleen
47	chr22:32313000-32313800	Flanking Active TSS	GM12878-XiMat	blood
48	chr22:32313000-32314000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
49	chr22:32313000-32314000	Flanking Active TSS	HepG2	liver
50	chr22:32313000-32315400	Enhancers	Fetal Muscle Trunk	muscle

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