Variant report

Variant	rs5998168
Chromosome Location	chr22:32297296-32297297
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	22:31836635-31847259..22:32294405-32304383	Hela-S3	cervix:
2	22:32170492-32188129..22:32294405-32304383	Hela-S3	cervix:
3	22:32162110-32166713..22:32294405-32304383	H1-hESC	embryonic stem cell:	embryo
4	22:32102727-32109893..22:32294405-32304383	Hela-S3	cervix:
5	chr22:32297061..32299197-chr22:32349348..32352243,2	K562	blood:
6	chr22:32295951..32297894-chr22:32305231..32307737,2	K562	blood:
7	chr22:32296295..32297952-chr22:32343525..32345760,2	K562	blood:
8	22:31864703-31891033..22:32294405-32304383	K562	blood:
9	22:32294405-32304383..22:33262063-33266567	Hela-S3	cervix:
10	22:32294405-32304383..22:32868055-32872511	Hela-S3	cervix:
11	22:32053085-32061138..22:32294405-32304383	K562	blood:
12	22:32012966-32043914..22:32294405-32304383	Hela-S3	cervix:

No data

Variant related genes	Relation type
ENSG00000183530	Chromatin interaction
ENSG00000238910	Chromatin interaction
ENSG00000199248	Chromatin interaction
ENSG00000100150	Chromatin interaction
ENSG00000100225	Chromatin interaction
ENSG00000198089	Chromatin interaction
ENSG00000184708	Chromatin interaction
ENSG00000241878	Chromatin interaction
ENSG00000185666	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1012068	0.96[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11703587	0.88[ASN][1000 genomes]
rs12167583	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4820997	0.88[ASN][1000 genomes]
rs4820999	0.86[ASN][1000 genomes]
rs5749339	0.88[ASN][1000 genomes]
rs5753817	0.88[ASN][1000 genomes]
rs5753820	0.87[ASN][1000 genomes]
rs5994441	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs5994442	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs5994449	0.90[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs5998140	0.89[AFR][1000 genomes]
rs5998141	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs5998152	0.81[AFR][1000 genomes]
rs5998173	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7287054	0.84[AFR][1000 genomes]
rs9619241	0.83[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs5998168	MORC2	cis	temporal cortex	BrainEAC

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32242400-32313400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr22:32244400-32305400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr22:32244600-32303400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr22:32247600-32307400	Weak transcription	Hela-S3	cervix
5	chr22:32267000-32297400	Weak transcription	Fetal Heart	heart
6	chr22:32268000-32308000	Weak transcription	A549	lung
7	chr22:32271200-32303400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr22:32271400-32298400	Weak transcription	HSMMtube	muscle
9	chr22:32271600-32297400	Weak transcription	HSMM	muscle
10	chr22:32272600-32298200	Weak transcription	NHLF	lung
11	chr22:32273000-32304000	Weak transcription	HMEC	breast
12	chr22:32274000-32306600	Strong transcription	Primary B cells from peripheral blood	blood
13	chr22:32274400-32306600	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr22:32276000-32315200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr22:32277600-32302400	Weak transcription	NHEK	skin
16	chr22:32281000-32314800	Weak transcription	Right Atrium	heart
17	chr22:32281200-32300800	Weak transcription	Colon Smooth Muscle	Colon
18	chr22:32281400-32301600	Weak transcription	Pancreas	Pancrea
19	chr22:32284000-32302200	Strong transcription	Fetal Muscle Trunk	muscle
20	chr22:32287800-32302000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr22:32288000-32298600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr22:32288000-32303400	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr22:32288000-32307800	Weak transcription	NH-A	brain
24	chr22:32288200-32308800	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr22:32289200-32299200	Strong transcription	Lung	lung
26	chr22:32289800-32298400	Weak transcription	Gastric	stomach
27	chr22:32290200-32297600	Weak transcription	Colonic Mucosa	Colon
28	chr22:32290200-32298400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr22:32290200-32298600	Weak transcription	Esophagus	oesophagus
30	chr22:32291400-32308200	Strong transcription	Fetal Stomach	stomach
31	chr22:32292200-32297400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr22:32292200-32307400	Weak transcription	Osteobl	bone
33	chr22:32293400-32298000	Weak transcription	Primary hematopoietic stem cells	blood
34	chr22:32293800-32298400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr22:32293800-32308000	Weak transcription	Small Intestine	intestine
36	chr22:32294000-32297400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr22:32294000-32297400	Weak transcription	Ovary	ovary
38	chr22:32294000-32301600	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr22:32294200-32297400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr22:32294200-32297400	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr22:32294200-32297600	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr22:32294200-32298000	Weak transcription	Rectal Smooth Muscle	rectum
43	chr22:32294200-32298600	Weak transcription	Psoas Muscle	Psoas
44	chr22:32294200-32308600	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr22:32294400-32297400	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr22:32294400-32297400	Weak transcription	Aorta	Aorta
47	chr22:32294400-32298200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr22:32294400-32298400	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr22:32294400-32300800	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr22:32294400-32301400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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