Variant report

Variant	rs5998152
Chromosome Location	chr22:32263162-32263163
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:32262877..32264774-chr22:32266602..32269023,2	MCF-7	breast:
2	chr22:32146377..32149751-chr22:32262350..32266440,4	K562	blood:
3	chr22:32262048..32263916-chr22:32341893..32344867,2	K562	blood:
4	chr22:32261138..32263306-chr22:32343314..32346070,2	K562	blood:
5	chr22:32262556..32265351-chr22:32275832..32277709,2	K562	blood:

Variant related genes	Relation type
ENSG00000128245	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1012068	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12167583	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs136868	0.86[AFR][1000 genomes]
rs5994441	0.81[CEU][hapmap]
rs5994442	0.84[CEU][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs5994443	0.90[CEU][hapmap];0.89[YRI][hapmap]
rs5994449	0.82[CEU][hapmap];0.87[YRI][hapmap];0.92[AMR][1000 genomes]
rs5998140	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs5998168	0.81[AFR][1000 genomes]
rs5998173	0.92[AMR][1000 genomes]
rs7287054	0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32192400-32266600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr22:32226200-32263200	Weak transcription	Stomach Mucosa	stomach
3	chr22:32241400-32263600	Weak transcription	HSMMtube	muscle
4	chr22:32242400-32313400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr22:32242800-32266400	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr22:32243200-32294200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr22:32243600-32266200	Weak transcription	A549	lung
8	chr22:32244400-32266200	Weak transcription	HUVEC	blood vessel
9	chr22:32244400-32305400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr22:32244600-32264200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr22:32244600-32266800	Weak transcription	Colon Smooth Muscle	Colon
12	chr22:32244600-32270200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr22:32244600-32303400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr22:32244800-32266600	Weak transcription	Osteobl	bone
15	chr22:32247000-32282400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr22:32247600-32307400	Weak transcription	Hela-S3	cervix
17	chr22:32247800-32264800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr22:32247800-32270400	Weak transcription	Psoas Muscle	Psoas
19	chr22:32249200-32289200	Weak transcription	HepG2	liver
20	chr22:32250800-32266200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr22:32252400-32266600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr22:32253400-32275600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr22:32253800-32263400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr22:32253800-32266600	Weak transcription	Fetal Kidney	kidney
25	chr22:32253800-32268800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr22:32254200-32266600	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr22:32254200-32293800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr22:32254400-32264600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr22:32254400-32265000	Weak transcription	Aorta	Aorta
30	chr22:32254400-32266200	Weak transcription	Fetal Thymus	thymus
31	chr22:32254400-32267400	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr22:32254400-32270800	Weak transcription	Small Intestine	intestine
33	chr22:32255400-32273000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr22:32255800-32282600	Strong transcription	Fetal Muscle Leg	muscle
35	chr22:32256200-32266600	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr22:32256400-32264600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr22:32256400-32266600	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr22:32256400-32268200	Weak transcription	Colonic Mucosa	Colon
39	chr22:32256600-32265600	Weak transcription	Fetal Heart	heart
40	chr22:32256600-32266600	Weak transcription	Brain Cingulate Gyrus	brain
41	chr22:32256600-32266800	Weak transcription	Brain Angular Gyrus	brain
42	chr22:32256800-32293400	Weak transcription	Fetal Brain Male	brain
43	chr22:32257000-32266600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr22:32257200-32266400	Weak transcription	Fetal Lung	lung
45	chr22:32257600-32264400	Weak transcription	Esophagus	oesophagus
46	chr22:32257600-32265600	Weak transcription	Gastric	stomach
47	chr22:32257600-32266200	Weak transcription	Brain Hippocampus Middle	brain
48	chr22:32257600-32266600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr22:32257600-32266600	Weak transcription	Right Ventricle	heart
50	chr22:32257600-32266800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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