Variant report

Variant	rs5998140
Chromosome Location	chr22:32241947-32241948
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:32236172..32237925-chr22:32240639..32242494,2	MCF-7	breast:
2	chr22:32143674..32146329-chr22:32241291..32243134,2	K562	blood:

Variant related genes	Relation type
ENSG00000183530	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1012068	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12167583	0.81[EUR][1000 genomes]
rs5994441	0.90[EUR][1000 genomes]
rs5994442	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs5994449	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs5998141	0.94[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs5998152	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs5998168	0.89[AFR][1000 genomes]
rs5998173	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7287054	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7290856	0.81[AMR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32172200-32254400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr22:32188800-32259600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr22:32192400-32242200	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr22:32192400-32251000	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr22:32192400-32266600	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr22:32193000-32250600	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr22:32193200-32246000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr22:32193200-32250600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr22:32197200-32251000	Strong transcription	Primary B cells from cord blood	blood
10	chr22:32205200-32257600	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr22:32207800-32244000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr22:32209000-32245800	Strong transcription	Primary T cells from cord blood	blood
13	chr22:32209000-32254600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr22:32210600-32251000	Strong transcription	Fetal Stomach	stomach
15	chr22:32218200-32242200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr22:32218800-32247200	Weak transcription	Psoas Muscle	Psoas
17	chr22:32219200-32243800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr22:32221400-32254600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr22:32223200-32242800	Weak transcription	Fetal Brain Male	brain
20	chr22:32226200-32263200	Weak transcription	Stomach Mucosa	stomach
21	chr22:32226600-32247800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr22:32226800-32242000	Weak transcription	NH-A	brain
23	chr22:32226800-32247000	Weak transcription	Fetal Heart	heart
24	chr22:32227000-32254200	Strong transcription	Fetal Intestine Small	intestine
25	chr22:32227200-32242000	Weak transcription	A549	lung
26	chr22:32227400-32242000	Weak transcription	NHDF-Ad	bronchial
27	chr22:32227600-32254200	Strong transcription	Duodenum Mucosa	Duodenum
28	chr22:32229000-32246200	Strong transcription	Sigmoid Colon	Sigmoid Colon
29	chr22:32229600-32254600	Strong transcription	Fetal Muscle Trunk	muscle
30	chr22:32229800-32250400	Strong transcription	Thymus	Thymus
31	chr22:32229800-32251000	Strong transcription	Fetal Muscle Leg	muscle
32	chr22:32229800-32253000	Strong transcription	Fetal Intestine Large	intestine
33	chr22:32230000-32248800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr22:32230200-32245200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr22:32230600-32250800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr22:32230800-32246600	Strong transcription	Placenta	Placenta
37	chr22:32231000-32250400	Strong transcription	Adipose Nuclei	Adipose
38	chr22:32231400-32251000	Strong transcription	Spleen	Spleen
39	chr22:32231400-32260400	Strong transcription	Liver	Liver
40	chr22:32231600-32245400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr22:32231600-32248200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr22:32231600-32248200	Strong transcription	Fetal Thymus	thymus
43	chr22:32231800-32246200	Strong transcription	Left Ventricle	heart
44	chr22:32232600-32247800	Strong transcription	Fetal Brain Female	brain
45	chr22:32234200-32242800	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr22:32236000-32244000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr22:32236000-32245200	Strong transcription	NHEK	skin
48	chr22:32236000-32255000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr22:32236200-32245000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr22:32236400-32250400	Strong transcription	Esophagus	oesophagus

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