Variant report

Variant	rs5998141
Chromosome Location	chr22:32244240-32244241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1012068	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12167583	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5994431	0.82[AMR][1000 genomes]
rs5994432	0.81[AMR][1000 genomes]
rs5994441	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5994442	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5998136	0.82[AMR][1000 genomes]
rs5998140	0.94[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs5998168	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7287054	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32172200-32254400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr22:32188800-32259600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr22:32192400-32251000	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr22:32192400-32266600	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr22:32193000-32250600	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr22:32193200-32246000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr22:32193200-32250600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr22:32197200-32251000	Strong transcription	Primary B cells from cord blood	blood
9	chr22:32205200-32257600	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr22:32209000-32245800	Strong transcription	Primary T cells from cord blood	blood
11	chr22:32209000-32254600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr22:32210600-32251000	Strong transcription	Fetal Stomach	stomach
13	chr22:32218800-32247200	Weak transcription	Psoas Muscle	Psoas
14	chr22:32221400-32254600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr22:32226200-32263200	Weak transcription	Stomach Mucosa	stomach
16	chr22:32226600-32247800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr22:32226800-32247000	Weak transcription	Fetal Heart	heart
18	chr22:32227000-32254200	Strong transcription	Fetal Intestine Small	intestine
19	chr22:32227600-32254200	Strong transcription	Duodenum Mucosa	Duodenum
20	chr22:32229000-32246200	Strong transcription	Sigmoid Colon	Sigmoid Colon
21	chr22:32229600-32254600	Strong transcription	Fetal Muscle Trunk	muscle
22	chr22:32229800-32250400	Strong transcription	Thymus	Thymus
23	chr22:32229800-32251000	Strong transcription	Fetal Muscle Leg	muscle
24	chr22:32229800-32253000	Strong transcription	Fetal Intestine Large	intestine
25	chr22:32230000-32248800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr22:32230200-32245200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr22:32230600-32250800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr22:32230800-32246600	Strong transcription	Placenta	Placenta
29	chr22:32231000-32250400	Strong transcription	Adipose Nuclei	Adipose
30	chr22:32231400-32251000	Strong transcription	Spleen	Spleen
31	chr22:32231400-32260400	Strong transcription	Liver	Liver
32	chr22:32231600-32245400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr22:32231600-32248200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr22:32231600-32248200	Strong transcription	Fetal Thymus	thymus
35	chr22:32231800-32246200	Strong transcription	Left Ventricle	heart
36	chr22:32232600-32247800	Strong transcription	Fetal Brain Female	brain
37	chr22:32236000-32245200	Strong transcription	NHEK	skin
38	chr22:32236000-32255000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr22:32236200-32245000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr22:32236400-32250400	Strong transcription	Esophagus	oesophagus
41	chr22:32236400-32250800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr22:32236800-32245000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr22:32236800-32245400	Strong transcription	Lung	lung
44	chr22:32237000-32245400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr22:32237600-32244400	Strong transcription	Muscle Satellite Cultured Cells	--
46	chr22:32238000-32250800	Strong transcription	Stomach Smooth Muscle	stomach
47	chr22:32238000-32258000	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr22:32238200-32245000	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr22:32238400-32244400	Strong transcription	Rectal Mucosa Donor 31	rectum
50	chr22:32238600-32244400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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