Variant report

Variant	rs4829131
Chromosome Location	chrX:33127746-33127747
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10081912	0.81[CEU][hapmap]
rs2064442	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2143845	1.00[CEU][hapmap]
rs4829132	0.81[CEU][hapmap]
rs4829280	0.81[CEU][hapmap]
rs5928175	1.00[CEU][hapmap]
rs5928177	1.00[CEU][hapmap]
rs5972756	0.81[CEU][hapmap]
rs6527260	1.00[CEU][hapmap]
rs7064140	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755357	chrX:32352714-33294345	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv993565	chrX:32627134-33399637	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv481927	chrX:32755517-33130735	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv932521	chrX:32947000-33798879	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv933413	chrX:32978894-33146798	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv949075	chrX:33056693-33394974	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv522100	chrX:33065888-33320612	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv522469	chrX:33065888-33320612	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:33123400-33127800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chrX:33124200-33138400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chrX:33127200-33128400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chrX:33127200-33128400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chrX:33127400-33127800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chrX:33127400-33128200	Enhancers	Brain Hippocampus Middle	brain
7	chrX:33127400-33128200	Active TSS	Brain Inferior Temporal Lobe	brain
8	chrX:33127400-33128400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chrX:33127400-33128400	Enhancers	Fetal Heart	heart
10	chrX:33127400-33128800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chrX:33127400-33128800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chrX:33127400-33129400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chrX:33127600-33128000	Active TSS	Brain Substantia Nigra	brain
14	chrX:33127600-33128200	Active TSS	Brain Cingulate Gyrus	brain
15	chrX:33127600-33128800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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