Variant report

Variant	rs5972756
Chromosome Location	chrX:33139722-33139723
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10081912	1.00[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs12015039	1.00[CHD][hapmap]
rs12392440	1.00[CHD][hapmap]
rs16990957	1.00[CHD][hapmap]
rs2024614	0.80[GIH][hapmap]
rs2064442	0.81[CEU][hapmap]
rs2143845	0.81[CEU][hapmap]
rs4829131	0.81[CEU][hapmap]
rs4829132	1.00[CEU][hapmap]
rs4829280	1.00[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.94[TSI][hapmap]
rs5927113	1.00[CHD][hapmap]
rs5928175	0.81[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap]
rs5928177	0.81[CEU][hapmap]
rs5972783	1.00[CHD][hapmap]
rs6527260	0.81[CEU][hapmap]
rs7064140	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755357	chrX:32352714-33294345	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv993565	chrX:32627134-33399637	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv932521	chrX:32947000-33798879	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv933413	chrX:32978894-33146798	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv949075	chrX:33056693-33394974	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv522100	chrX:33065888-33320612	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv522469	chrX:33065888-33320612	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:33128400-33146200	Weak transcription	Fetal Heart	heart
2	chrX:33134600-33146200	Weak transcription	Left Ventricle	heart
3	chrX:33137600-33146000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chrX:33138600-33141600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chrX:33138600-33144600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chrX:33138600-33196600	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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