Variant report

Variant	rs5972783
Chromosome Location	chrX:33246043-33246044
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10081912	1.00[CHD][hapmap]
rs12015039	0.88[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs12392440	1.00[CHD][hapmap];0.93[TSI][hapmap]
rs16990957	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs2064265	1.00[MEX][hapmap];0.93[TSI][hapmap]
rs2143189	0.85[TSI][hapmap]
rs4829280	1.00[CHD][hapmap]
rs5928175	1.00[CHD][hapmap]
rs5928206	0.88[YRI][hapmap]
rs5971701	0.85[TSI][hapmap]
rs5971703	0.82[CEU][hapmap]
rs5972756	1.00[CHD][hapmap]
rs5972779	0.88[CEU][hapmap];0.81[MKK][hapmap]
rs5972784	0.88[CEU][hapmap]
rs7066927	0.88[CEU][hapmap]
rs7877447	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755357	chrX:32352714-33294345	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv993565	chrX:32627134-33399637	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv932521	chrX:32947000-33798879	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv949075	chrX:33056693-33394974	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv522100	chrX:33065888-33320612	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv522469	chrX:33065888-33320612	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv432295	chrX:33158109-34158023	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv428704	chrX:33208905-33342793	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
9	nsv527706	chrX:33209180-33270451	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
10	esv3434377	chrX:33235344-33263764	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
11	esv3363582	chrX:33238844-33263764	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:33244600-33247600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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