Variant report

Variant	rs4833689
Chromosome Location	chr4:121775135-121775136
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:121769272..121771821-chr4:121774320..121777055,2	MCF-7	breast:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10006287	0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.87[ASN][1000 genomes]
rs10026533	0.83[CHD][hapmap];0.81[JPT][hapmap]
rs1015219	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10518380	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11943025	0.85[CEU][hapmap];0.91[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12499872	0.85[CEU][hapmap];0.91[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12501914	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12503895	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12507367	0.91[JPT][hapmap];0.82[AMR][1000 genomes]
rs12510578	0.90[ASN][1000 genomes]
rs12511422	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12513227	0.93[JPT][hapmap]
rs12639719	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12639772	0.85[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12640648	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12644850	0.86[ASN][1000 genomes]
rs12644883	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12648660	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1397768	0.93[JPT][hapmap]
rs1397771	0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1397774	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1450461	0.90[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs1463785	0.86[JPT][hapmap]
rs1470695	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1511302	1.00[ASW][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.85[ASN][1000 genomes]
rs1511314	1.00[YRI][hapmap]
rs1588524	1.00[ASW][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1597491	0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs168226	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17051240	0.93[JPT][hapmap]
rs17051244	0.90[CHB][hapmap];0.92[JPT][hapmap]
rs17051252	0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17051254	0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17051259	0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17051271	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17051275	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs171068	0.91[ASN][1000 genomes]
rs1809075	0.91[ASN][1000 genomes]
rs2136999	0.91[CHB][hapmap];0.93[JPT][hapmap]
rs2167208	0.85[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2667171	0.91[ASN][1000 genomes]
rs28488919	0.87[ASN][1000 genomes]
rs28810489	0.87[ASN][1000 genomes]
rs343182	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs343185	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs343189	1.00[ASW][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.91[ASN][1000 genomes]
rs3789139	0.91[CHB][hapmap];0.93[JPT][hapmap]
rs3806807	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3827584	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4833182	0.93[JPT][hapmap]
rs4833187	1.00[YRI][hapmap]
rs4833670	0.91[JPT][hapmap]
rs4833672	0.91[CHB][hapmap];0.93[JPT][hapmap]
rs4833688	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57023921	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6813562	0.86[JPT][hapmap]
rs6855578	0.82[CHB][hapmap];0.93[JPT][hapmap]
rs72678319	0.85[ASN][1000 genomes]
rs72678324	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72678335	0.87[ASN][1000 genomes]
rs72680418	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs72680432	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72680433	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72680438	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72680440	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72680445	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72680451	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72680462	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72680468	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72680474	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72680476	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72680477	0.90[ASN][1000 genomes]
rs72680480	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72680484	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72680490	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72680497	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72680498	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs896060	1.00[ASW][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.91[ASN][1000 genomes]
rs994831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1013704	chr4:121657648-121791601	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121756800-121779800	Weak transcription	Aorta	Aorta
2	chr4:121759600-121775400	Weak transcription	Gastric	stomach
3	chr4:121760400-121775800	Weak transcription	Lung	lung
4	chr4:121761200-121778200	Weak transcription	Fetal Muscle Leg	muscle
5	chr4:121761200-121783600	Weak transcription	Pancreas	Pancrea
6	chr4:121761400-121777600	Weak transcription	Left Ventricle	heart
7	chr4:121763400-121778800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr4:121763600-121776600	Weak transcription	Fetal Stomach	stomach
9	chr4:121763800-121776600	Weak transcription	Fetal Heart	heart
10	chr4:121765800-121786600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:121766000-121776600	Weak transcription	Fetal Intestine Small	intestine
12	chr4:121766000-121786600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr4:121766200-121790800	Weak transcription	Ovary	ovary
14	chr4:121766400-121776600	Weak transcription	Fetal Intestine Large	intestine
15	chr4:121769000-121779600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr4:121769200-121779600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr4:121771000-121777000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:121771400-121781200	Weak transcription	HSMM	muscle
19	chr4:121771600-121783200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr4:121771800-121779600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:121771800-121786800	Weak transcription	Fetal Lung	lung
22	chr4:121774000-121775200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr4:121774200-121775200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr4:121774400-121775200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr4:121774400-121776800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr4:121774400-121780400	Enhancers	NHDF-Ad	bronchial
27	chr4:121774600-121775200	Enhancers	Fetal Kidney	kidney
28	chr4:121774800-121775400	Enhancers	Muscle Satellite Cultured Cells	--
29	chr4:121774800-121775600	Enhancers	Osteobl	bone
30	chr4:121774800-121778600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr4:121774800-121778600	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links