Variant report

Variant	rs10026533
Chromosome Location	chr4:121694059-121694060
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10006287	0.83[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10019591	1.00[YRI][hapmap]
rs1015219	0.83[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1033096	0.80[ASN][1000 genomes]
rs10518380	0.83[CHD][hapmap]
rs11098586	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs11943025	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs12499586	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12499872	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs12507367	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12510578	0.85[AMR][1000 genomes]
rs12513227	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12639772	0.83[CHB][hapmap]
rs12644850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1349347	1.00[YRI][hapmap]
rs1376099	1.00[YRI][hapmap]
rs1376108	1.00[YRI][hapmap]
rs1397768	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1397769	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1397771	0.83[CHB][hapmap];0.81[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1397773	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1397774	0.83[CHB][hapmap];0.81[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1450461	0.90[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1450462	1.00[YRI][hapmap]
rs1463785	0.80[ASN][1000 genomes]
rs1496260	0.80[ASN][1000 genomes]
rs1511302	0.83[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.93[LWK][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1588524	0.83[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs168226	0.83[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17051240	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17051244	0.81[CHB][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17051252	0.83[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17051254	0.83[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17051259	0.83[CHB][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17051275	0.83[CHB][hapmap]
rs171068	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1809075	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1849075	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1868717	1.00[YRI][hapmap]
rs1912720	1.00[YRI][hapmap]
rs2136997	1.00[YRI][hapmap]
rs2136999	0.83[CHB][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2167208	0.83[CHB][hapmap]
rs2597537	1.00[YRI][hapmap]
rs2597540	0.81[LWK][hapmap];1.00[YRI][hapmap]
rs2667171	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28488919	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28810489	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs343174	1.00[YRI][hapmap]
rs343181	0.93[LWK][hapmap];1.00[YRI][hapmap]
rs343182	0.83[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs343185	0.90[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs343189	0.83[CHB][hapmap];0.84[CHD][hapmap];0.92[GIH][hapmap];0.81[JPT][hapmap];0.86[LWK][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs343190	1.00[YRI][hapmap]
rs3789139	0.83[CHB][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3789141	0.81[LWK][hapmap];1.00[YRI][hapmap]
rs3804170	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3804175	0.82[ASN][1000 genomes]
rs3827584	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4833182	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4833670	0.91[ASN][1000 genomes]
rs4833671	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4833672	0.83[CHB][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4833676	0.81[LWK][hapmap];1.00[YRI][hapmap]
rs4833677	1.00[YRI][hapmap]
rs4833689	0.83[CHD][hapmap];0.81[JPT][hapmap]
rs6813562	0.80[ASN][1000 genomes]
rs6820869	1.00[YRI][hapmap]
rs6855578	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72678303	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72678309	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72678319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72678324	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72678335	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72680418	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72680477	0.85[AMR][1000 genomes]
rs843558	1.00[YRI][hapmap]
rs843578	1.00[YRI][hapmap]
rs896060	0.83[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.93[LWK][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs994831	0.83[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879852	chr4:121108734-121768496	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1004485	chr4:121542992-121716769	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv916737	chr4:121589793-121748847	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv461634	chr4:121623057-121765527	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv595334	chr4:121623057-121765527	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1013704	chr4:121657648-121791601	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
8	nsv879855	chr4:121691899-121747335	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121671800-121697000	Weak transcription	Pancreas	Pancrea
2	chr4:121671800-121728600	Weak transcription	Left Ventricle	heart
3	chr4:121672000-121722400	Weak transcription	Right Ventricle	heart
4	chr4:121672400-121728800	Weak transcription	Aorta	Aorta
5	chr4:121672400-121728800	Weak transcription	Fetal Stomach	stomach
6	chr4:121673000-121697200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr4:121673000-121705200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:121673000-121722400	Weak transcription	Fetal Muscle Leg	muscle
9	chr4:121673000-121737400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr4:121677000-121702800	Weak transcription	Gastric	stomach
11	chr4:121677000-121707800	Weak transcription	Psoas Muscle	Psoas
12	chr4:121677200-121714000	Weak transcription	Fetal Intestine Large	intestine
13	chr4:121677200-121723400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr4:121679600-121721800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr4:121686000-121705200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr4:121689800-121703000	Weak transcription	Brain Angular Gyrus	brain
17	chr4:121690600-121715800	Weak transcription	Lung	lung
18	chr4:121690600-121719600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr4:121690600-121728800	Weak transcription	Fetal Intestine Small	intestine
20	chr4:121691000-121697800	Weak transcription	Fetal Lung	lung
21	chr4:121691200-121705400	Weak transcription	HSMM	muscle
22	chr4:121691200-121722200	Weak transcription	Ovary	ovary
23	chr4:121693000-121696000	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr4:121693200-121695800	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr4:121693200-121696000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr4:121693200-121696200	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr4:121693400-121696400	Enhancers	Primary hematopoietic stem cells	blood
28	chr4:121693400-121698000	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr4:121693400-121703600	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr4:121693600-121696000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr4:121694000-121697000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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