Variant report

Variant	rs343174
Chromosome Location	chr4:121765247-121765248
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:121763712..121766459-chr4:121767957..121770236,3	MCF-7	breast:
2	chr4:121764972..121765670-chr4:121898848..121899366,2	MCF-7	breast:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10006287	1.00[YRI][hapmap]
rs10019591	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10026533	1.00[YRI][hapmap]
rs1015219	1.00[YRI][hapmap]
rs1349347	1.00[YRI][hapmap]
rs1376099	1.00[YRI][hapmap]
rs1376103	1.00[AMR][1000 genomes]
rs1376108	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1390562	1.00[AMR][1000 genomes]
rs1450461	1.00[YRI][hapmap]
rs1450462	1.00[YRI][hapmap]
rs1496255	1.00[AMR][1000 genomes]
rs1496264	1.00[AMR][1000 genomes]
rs1511302	1.00[YRI][hapmap]
rs1584594	1.00[AMR][1000 genomes]
rs168226	1.00[YRI][hapmap]
rs17051246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17051252	1.00[YRI][hapmap]
rs17051254	1.00[YRI][hapmap]
rs171068	1.00[YRI][hapmap]
rs1826806	1.00[AMR][1000 genomes]
rs1839475	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1868717	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1901134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1912720	1.00[YRI][hapmap]
rs2136997	1.00[YRI][hapmap]
rs2597537	1.00[YRI][hapmap]
rs2597540	1.00[YRI][hapmap]
rs2597543	1.00[AMR][1000 genomes]
rs2667171	1.00[YRI][hapmap]
rs2667193	1.00[AMR][1000 genomes]
rs2667194	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs28477468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28879750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2941872	1.00[AMR][1000 genomes]
rs2941873	1.00[AMR][1000 genomes]
rs3106315	1.00[AMR][1000 genomes]
rs343181	1.00[YRI][hapmap]
rs343182	1.00[YRI][hapmap]
rs343185	1.00[YRI][hapmap]
rs343186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs343188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs343189	1.00[YRI][hapmap]
rs343190	1.00[YRI][hapmap]
rs343207	1.00[AMR][1000 genomes]
rs343208	1.00[AMR][1000 genomes]
rs3789141	1.00[YRI][hapmap]
rs4833676	1.00[YRI][hapmap]
rs4833677	1.00[YRI][hapmap]
rs59072184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6820869	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs705115	1.00[AMR][1000 genomes]
rs843552	1.00[AMR][1000 genomes]
rs843558	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs843559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs843563	1.00[AMR][1000 genomes]
rs843567	1.00[AMR][1000 genomes]
rs843578	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs896060	1.00[YRI][hapmap]
rs896063	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879852	chr4:121108734-121768496	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv461634	chr4:121623057-121765527	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv595334	chr4:121623057-121765527	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1013704	chr4:121657648-121791601	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121729600-121770400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr4:121743800-121765400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:121750400-121768400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr4:121755800-121774600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr4:121756800-121779800	Weak transcription	Aorta	Aorta
6	chr4:121758200-121770400	Weak transcription	HSMM	muscle
7	chr4:121758200-121774600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr4:121759600-121775400	Weak transcription	Gastric	stomach
9	chr4:121760000-121765400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr4:121760400-121775800	Weak transcription	Lung	lung
11	chr4:121760600-121765600	Weak transcription	Ovary	ovary
12	chr4:121761200-121778200	Weak transcription	Fetal Muscle Leg	muscle
13	chr4:121761200-121783600	Weak transcription	Pancreas	Pancrea
14	chr4:121761400-121774600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:121761400-121777600	Weak transcription	Left Ventricle	heart
16	chr4:121761600-121767400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr4:121762000-121765400	Weak transcription	Fetal Intestine Small	intestine
18	chr4:121763400-121778800	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr4:121763600-121765400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr4:121763600-121776600	Weak transcription	Fetal Stomach	stomach
21	chr4:121763800-121769800	Weak transcription	Osteobl	bone
22	chr4:121763800-121770400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr4:121763800-121771000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr4:121763800-121776600	Weak transcription	Fetal Heart	heart
25	chr4:121764000-121770000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr4:121764200-121765400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr4:121764200-121765400	Weak transcription	NHDF-Ad	bronchial
28	chr4:121764200-121767800	Weak transcription	Colon Smooth Muscle	Colon
29	chr4:121764400-121769600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr4:121765000-121765600	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr4:121765000-121766400	Enhancers	Fetal Intestine Large	intestine
32	chr4:121765200-121765600	Enhancers	Fetal Lung	lung
33	chr4:121765200-121765600	Enhancers	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links