Variant report

Variant	rs1826806
Chromosome Location	chr4:121598855-121598856
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10019591	1.00[AMR][1000 genomes]
rs10019777	1.00[AMR][1000 genomes]
rs1376103	1.00[AMR][1000 genomes]
rs1390562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1496255	1.00[AMR][1000 genomes]
rs1496264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17051246	1.00[AMR][1000 genomes]
rs1839475	1.00[AMR][1000 genomes]
rs1868717	1.00[AMR][1000 genomes]
rs1901134	1.00[AMR][1000 genomes]
rs2088272	0.89[AFR][1000 genomes]
rs2597543	1.00[AMR][1000 genomes]
rs2667193	1.00[AMR][1000 genomes]
rs28477468	1.00[AMR][1000 genomes]
rs28879750	1.00[AMR][1000 genomes]
rs2941872	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2941873	1.00[AMR][1000 genomes]
rs3106315	1.00[AMR][1000 genomes]
rs343174	1.00[AMR][1000 genomes]
rs343186	1.00[AMR][1000 genomes]
rs343188	1.00[AMR][1000 genomes]
rs59072184	1.00[AMR][1000 genomes]
rs705115	1.00[AMR][1000 genomes]
rs843552	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs843558	1.00[AMR][1000 genomes]
rs843559	1.00[AMR][1000 genomes]
rs843563	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs843567	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs843578	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879852	chr4:121108734-121768496	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1004485	chr4:121542992-121716769	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv916737	chr4:121589793-121748847	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121591200-121620600	Weak transcription	Left Ventricle	heart
2	chr4:121595400-121602600	Weak transcription	Ovary	ovary

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links