Variant report

Variant	rs1496255
Chromosome Location	chr4:121604434-121604435
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10019591	1.00[AMR][1000 genomes]
rs10019777	1.00[AMR][1000 genomes]
rs1376103	1.00[AMR][1000 genomes]
rs1390562	1.00[AMR][1000 genomes]
rs1496264	1.00[AMR][1000 genomes]
rs17051246	1.00[AMR][1000 genomes]
rs1826806	1.00[AMR][1000 genomes]
rs1839475	1.00[AMR][1000 genomes]
rs1868717	1.00[AMR][1000 genomes]
rs1901134	1.00[AMR][1000 genomes]
rs2597543	1.00[AMR][1000 genomes]
rs2667193	1.00[AMR][1000 genomes]
rs28477468	1.00[AMR][1000 genomes]
rs28879750	1.00[AMR][1000 genomes]
rs2941872	1.00[AMR][1000 genomes]
rs2941873	1.00[AMR][1000 genomes]
rs3106315	1.00[AMR][1000 genomes]
rs343174	1.00[AMR][1000 genomes]
rs343186	1.00[AMR][1000 genomes]
rs343188	1.00[AMR][1000 genomes]
rs343207	1.00[AMR][1000 genomes]
rs343208	1.00[AMR][1000 genomes]
rs59072184	1.00[AMR][1000 genomes]
rs705115	1.00[AMR][1000 genomes]
rs843552	1.00[AMR][1000 genomes]
rs843558	1.00[AMR][1000 genomes]
rs843559	1.00[AMR][1000 genomes]
rs843563	1.00[AMR][1000 genomes]
rs843567	1.00[AMR][1000 genomes]
rs843578	1.00[AMR][1000 genomes]
rs896063	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879852	chr4:121108734-121768496	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1004485	chr4:121542992-121716769	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv916737	chr4:121589793-121748847	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121591200-121620600	Weak transcription	Left Ventricle	heart
2	chr4:121603800-121604600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:121604000-121604600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr4:121604000-121605600	Enhancers	HSMM	muscle
5	chr4:121604400-121605000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:121604400-121605400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr4:121604400-121605400	Weak transcription	HSMMtube	muscle
8	chr4:121604400-121612200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:121604400-121612400	Weak transcription	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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