Variant report

Variant	rs2667193
Chromosome Location	chr4:121780081-121780082
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10019591	1.00[AMR][1000 genomes]
rs1376103	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1376108	1.00[AMR][1000 genomes]
rs1390562	1.00[AMR][1000 genomes]
rs1450476	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs1496255	1.00[AMR][1000 genomes]
rs1496264	1.00[AMR][1000 genomes]
rs1584594	1.00[AMR][1000 genomes]
rs17051246	1.00[AMR][1000 genomes]
rs1826806	1.00[AMR][1000 genomes]
rs1839475	1.00[AMR][1000 genomes]
rs1868717	1.00[AMR][1000 genomes]
rs1901134	1.00[AMR][1000 genomes]
rs2597543	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2667188	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs2667194	1.00[AMR][1000 genomes]
rs28477468	1.00[AMR][1000 genomes]
rs28879750	1.00[AMR][1000 genomes]
rs2941872	1.00[AMR][1000 genomes]
rs2941873	1.00[AMR][1000 genomes]
rs3106315	1.00[AMR][1000 genomes]
rs343174	1.00[AMR][1000 genomes]
rs343186	1.00[AMR][1000 genomes]
rs343188	1.00[AMR][1000 genomes]
rs343207	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs343208	1.00[AMR][1000 genomes]
rs59072184	1.00[AMR][1000 genomes]
rs6820869	1.00[AMR][1000 genomes]
rs705115	1.00[AMR][1000 genomes]
rs843552	1.00[AMR][1000 genomes]
rs843558	1.00[AMR][1000 genomes]
rs843559	1.00[AMR][1000 genomes]
rs843563	1.00[AMR][1000 genomes]
rs843567	1.00[AMR][1000 genomes]
rs843578	1.00[AMR][1000 genomes]
rs896063	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1013704	chr4:121657648-121791601	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121761200-121783600	Weak transcription	Pancreas	Pancrea
2	chr4:121765800-121786600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:121766000-121786600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr4:121766200-121790800	Weak transcription	Ovary	ovary
5	chr4:121771400-121781200	Weak transcription	HSMM	muscle
6	chr4:121771600-121783200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr4:121771800-121786800	Weak transcription	Fetal Lung	lung
8	chr4:121774400-121780400	Enhancers	NHDF-Ad	bronchial
9	chr4:121775200-121790800	Weak transcription	Fetal Kidney	kidney
10	chr4:121777000-121783600	Weak transcription	Fetal Intestine Small	intestine
11	chr4:121778600-121780200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:121779200-121780600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr4:121779400-121780200	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr4:121779400-121780600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr4:121779600-121780200	Enhancers	NHLF	lung
16	chr4:121779600-121780600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr4:121779800-121780400	Enhancers	HUVEC	blood vessel
18	chr4:121779800-121786400	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr4:121780000-121780200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr4:121780000-121780600	Enhancers	Muscle Satellite Cultured Cells	--
21	chr4:121780000-121786600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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