Variant report

Variant	rs3106315
Chromosome Location	chr4:121772114-121772115
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10019591	1.00[AMR][1000 genomes]
rs1376103	1.00[AMR][1000 genomes]
rs1376108	1.00[AMR][1000 genomes]
rs1390562	1.00[AMR][1000 genomes]
rs1496255	1.00[AMR][1000 genomes]
rs1496264	1.00[AMR][1000 genomes]
rs1584594	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17051246	1.00[AMR][1000 genomes]
rs1826806	1.00[AMR][1000 genomes]
rs1839475	1.00[AMR][1000 genomes]
rs1868717	1.00[AMR][1000 genomes]
rs1901134	1.00[AMR][1000 genomes]
rs2597543	1.00[AMR][1000 genomes]
rs2667193	1.00[AMR][1000 genomes]
rs2667194	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs28477468	1.00[AMR][1000 genomes]
rs28879750	1.00[AMR][1000 genomes]
rs2941872	1.00[AMR][1000 genomes]
rs2941873	1.00[AMR][1000 genomes]
rs343174	1.00[AMR][1000 genomes]
rs343186	1.00[AMR][1000 genomes]
rs343188	1.00[AMR][1000 genomes]
rs343207	1.00[AMR][1000 genomes]
rs343208	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59072184	1.00[AMR][1000 genomes]
rs6820869	1.00[AMR][1000 genomes]
rs705115	1.00[AMR][1000 genomes]
rs843552	1.00[AMR][1000 genomes]
rs843558	1.00[AMR][1000 genomes]
rs843559	1.00[AMR][1000 genomes]
rs843563	1.00[AMR][1000 genomes]
rs843567	1.00[AMR][1000 genomes]
rs843578	1.00[AMR][1000 genomes]
rs896063	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1013704	chr4:121657648-121791601	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121755800-121774600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr4:121756800-121779800	Weak transcription	Aorta	Aorta
3	chr4:121758200-121774600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr4:121759600-121775400	Weak transcription	Gastric	stomach
5	chr4:121760400-121775800	Weak transcription	Lung	lung
6	chr4:121761200-121778200	Weak transcription	Fetal Muscle Leg	muscle
7	chr4:121761200-121783600	Weak transcription	Pancreas	Pancrea
8	chr4:121761400-121774600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:121761400-121777600	Weak transcription	Left Ventricle	heart
10	chr4:121763400-121778800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr4:121763600-121776600	Weak transcription	Fetal Stomach	stomach
12	chr4:121763800-121776600	Weak transcription	Fetal Heart	heart
13	chr4:121765800-121786600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr4:121766000-121776600	Weak transcription	Fetal Intestine Small	intestine
15	chr4:121766000-121786600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr4:121766200-121790800	Weak transcription	Ovary	ovary
17	chr4:121766400-121776600	Weak transcription	Fetal Intestine Large	intestine
18	chr4:121769000-121774600	Weak transcription	Fetal Kidney	kidney
19	chr4:121769000-121779600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr4:121769200-121779600	Weak transcription	Fetal Muscle Trunk	muscle
21	chr4:121769600-121772200	Enhancers	NHDF-Ad	bronchial
22	chr4:121770200-121772200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr4:121770800-121772200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr4:121771000-121777000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr4:121771400-121781200	Weak transcription	HSMM	muscle
26	chr4:121771600-121774200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr4:121771600-121774400	Weak transcription	NHLF	lung
28	chr4:121771600-121783200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr4:121771800-121774000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr4:121771800-121774000	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr4:121771800-121774000	Weak transcription	Osteobl	bone
32	chr4:121771800-121774400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr4:121771800-121774800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr4:121771800-121779600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr4:121771800-121786800	Weak transcription	Fetal Lung	lung

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