Variant report

Variant	rs1901134
Chromosome Location	chr4:121754279-121754280
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10019591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1376103	1.00[AMR][1000 genomes]
rs1376108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1390562	1.00[AMR][1000 genomes]
rs1496255	1.00[AMR][1000 genomes]
rs1496264	1.00[AMR][1000 genomes]
rs1584594	1.00[AMR][1000 genomes]
rs17051246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1826806	1.00[AMR][1000 genomes]
rs1839475	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1868717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2597543	1.00[AMR][1000 genomes]
rs2667193	1.00[AMR][1000 genomes]
rs2667194	1.00[AMR][1000 genomes]
rs28477468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28879750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2941872	1.00[AMR][1000 genomes]
rs2941873	1.00[AMR][1000 genomes]
rs3106315	1.00[AMR][1000 genomes]
rs343174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs343186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs343188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs343207	1.00[AMR][1000 genomes]
rs343208	1.00[AMR][1000 genomes]
rs59072184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6820869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs705115	1.00[AMR][1000 genomes]
rs843552	1.00[AMR][1000 genomes]
rs843558	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs843559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs843563	1.00[AMR][1000 genomes]
rs843567	1.00[AMR][1000 genomes]
rs843578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs896063	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879852	chr4:121108734-121768496	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv461634	chr4:121623057-121765527	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv595334	chr4:121623057-121765527	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1013704	chr4:121657648-121791601	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121729600-121770400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr4:121730400-121760000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:121730400-121760800	Weak transcription	Pancreas	Pancrea
4	chr4:121732200-121754800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr4:121737600-121759800	Weak transcription	Lung	lung
6	chr4:121737800-121754400	Weak transcription	Aorta	Aorta
7	chr4:121738200-121759600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:121743800-121765400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:121747200-121755400	Weak transcription	Fetal Intestine Large	intestine
10	chr4:121750400-121768400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr4:121751600-121756400	Weak transcription	Left Ventricle	heart
12	chr4:121751600-121762000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr4:121751800-121754600	Weak transcription	Psoas Muscle	Psoas
14	chr4:121751800-121759600	Weak transcription	Ovary	ovary
15	chr4:121752000-121754400	Weak transcription	Fetal Lung	lung
16	chr4:121752600-121755600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:121753400-121762600	Weak transcription	Osteobl	bone
18	chr4:121754000-121754400	Enhancers	Fetal Heart	heart
19	chr4:121754200-121754400	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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