Variant report

Variant	rs1496264
Chromosome Location	chr4:121615777-121615778
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10019591	1.00[AMR][1000 genomes]
rs10019777	1.00[AMR][1000 genomes]
rs1376103	1.00[AMR][1000 genomes]
rs1390562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1496255	1.00[AMR][1000 genomes]
rs1584594	1.00[AMR][1000 genomes]
rs17051246	1.00[AMR][1000 genomes]
rs1826806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1839475	1.00[AMR][1000 genomes]
rs1868717	1.00[AMR][1000 genomes]
rs1901134	1.00[AMR][1000 genomes]
rs2088272	0.89[AFR][1000 genomes]
rs2597543	1.00[AMR][1000 genomes]
rs2667193	1.00[AMR][1000 genomes]
rs28477468	1.00[AMR][1000 genomes]
rs28879750	1.00[AMR][1000 genomes]
rs2941872	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2941873	1.00[AMR][1000 genomes]
rs3106315	1.00[AMR][1000 genomes]
rs343174	1.00[AMR][1000 genomes]
rs343186	1.00[AMR][1000 genomes]
rs343188	1.00[AMR][1000 genomes]
rs343207	1.00[AMR][1000 genomes]
rs343208	1.00[AMR][1000 genomes]
rs59072184	1.00[AMR][1000 genomes]
rs705115	1.00[AMR][1000 genomes]
rs843552	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs843558	1.00[AMR][1000 genomes]
rs843559	1.00[AMR][1000 genomes]
rs843563	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs843567	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs843578	1.00[AMR][1000 genomes]
rs896063	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879852	chr4:121108734-121768496	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1004485	chr4:121542992-121716769	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv916737	chr4:121589793-121748847	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121591200-121620600	Weak transcription	Left Ventricle	heart
2	chr4:121610200-121624600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr4:121612200-121617000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:121612400-121618200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr4:121612800-121616800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr4:121612800-121616800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:121613400-121616200	Enhancers	Fetal Intestine Small	intestine
8	chr4:121613400-121616400	Enhancers	Fetal Intestine Large	intestine
9	chr4:121613600-121617400	Enhancers	Rectal Smooth Muscle	rectum
10	chr4:121613600-121618000	Enhancers	Colon Smooth Muscle	Colon
11	chr4:121614000-121616800	Enhancers	NHEK	skin
12	chr4:121614200-121616200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr4:121614400-121616000	Weak transcription	Fetal Lung	lung
14	chr4:121614400-121616000	Weak transcription	A549	lung
15	chr4:121614400-121616200	Weak transcription	HSMM	muscle
16	chr4:121614400-121616200	Weak transcription	NH-A	brain
17	chr4:121614400-121616200	Weak transcription	NHDF-Ad	bronchial
18	chr4:121614400-121616200	Weak transcription	Osteobl	bone
19	chr4:121614400-121616400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:121614600-121616200	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr4:121614600-121616200	Weak transcription	NHLF	lung
22	chr4:121614800-121616200	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr4:121614800-121616800	Enhancers	Fetal Heart	heart
24	chr4:121615200-121615800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr4:121615200-121624200	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr4:121615600-121616000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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