Variant report

Variant	rs2667188
Chromosome Location	chr4:121784421-121784422
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11931234	1.00[JPT][hapmap]
rs11935242	0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11939905	0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11942376	0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11942389	0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12508015	0.81[CHB][hapmap]
rs1376101	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1376103	0.88[AFR][1000 genomes]
rs1450476	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450478	0.85[CHB][hapmap]
rs1511304	0.81[CHB][hapmap]
rs17051268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17051269	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17051270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17051274	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17051280	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2597543	0.88[AFR][1000 genomes]
rs2667193	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs2667195	0.93[CHB][hapmap]
rs3114958	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3115311	0.93[CHB][hapmap]
rs343167	0.93[CHB][hapmap]
rs343168	0.93[CHB][hapmap]
rs343170	0.93[CHB][hapmap]
rs343207	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs4639096	0.93[CHB][hapmap]
rs4833188	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4833682	0.80[CEU][hapmap];0.85[EUR][1000 genomes]
rs4833688	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4833690	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55962052	0.86[ASN][1000 genomes]
rs56004809	0.86[ASN][1000 genomes]
rs56339840	0.83[ASN][1000 genomes]
rs73843656	0.86[ASN][1000 genomes]
rs73843658	0.86[ASN][1000 genomes]
rs73843660	0.83[ASN][1000 genomes]
rs885460	0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1013704	chr4:121657648-121791601	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv4490	chr4:121782939-121801246	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121765800-121786600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:121766000-121786600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr4:121766200-121790800	Weak transcription	Ovary	ovary
4	chr4:121771800-121786800	Weak transcription	Fetal Lung	lung
5	chr4:121775200-121790800	Weak transcription	Fetal Kidney	kidney
6	chr4:121779800-121786400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr4:121780000-121786600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr4:121780200-121786800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr4:121780200-121790600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:121780600-121787000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:121783600-121784600	Enhancers	Pancreas	Pancrea
12	chr4:121783600-121786200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr4:121783800-121784600	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr4:121783800-121786400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr4:121784000-121784600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr4:121784200-121798000	Weak transcription	Fetal Intestine Small	intestine

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