Variant report

Variant	rs1376101
Chromosome Location	chr4:121782283-121782284
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11935242	0.82[ASN][1000 genomes]
rs1450476	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17051268	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17051269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17051270	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17051274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2278811	1.00[AFR][1000 genomes]
rs2667188	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3114958	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4833188	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4833682	0.85[EUR][1000 genomes]
rs4833690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55930284	1.00[AFR][1000 genomes]
rs55962052	0.82[ASN][1000 genomes]
rs56004809	0.82[ASN][1000 genomes]
rs60983006	0.83[ASN][1000 genomes]
rs73843656	0.82[ASN][1000 genomes]
rs73843658	0.82[ASN][1000 genomes]
rs885460	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1013704	chr4:121657648-121791601	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121761200-121783600	Weak transcription	Pancreas	Pancrea
2	chr4:121765800-121786600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:121766000-121786600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr4:121766200-121790800	Weak transcription	Ovary	ovary
5	chr4:121771600-121783200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr4:121771800-121786800	Weak transcription	Fetal Lung	lung
7	chr4:121775200-121790800	Weak transcription	Fetal Kidney	kidney
8	chr4:121777000-121783600	Weak transcription	Fetal Intestine Small	intestine
9	chr4:121779800-121786400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr4:121780000-121786600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr4:121780200-121786800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr4:121780200-121790600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr4:121780600-121787000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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