Variant report

Variant	rs17051274
Chromosome Location	chr4:121796205-121796206
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11931234	1.00[JPT][hapmap]
rs11935242	0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11939905	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs11942376	1.00[JPT][hapmap]
rs11942389	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1376101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450476	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1450478	0.92[CHB][hapmap]
rs17051268	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17051269	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17051270	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17051280	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2278811	1.00[AFR][1000 genomes]
rs2667188	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2667195	0.86[CHB][hapmap]
rs3114958	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3115311	0.86[CHB][hapmap]
rs343167	0.86[CHB][hapmap]
rs343168	0.86[CHB][hapmap]
rs343170	0.86[CHB][hapmap]
rs4639096	0.86[CHB][hapmap]
rs4833188	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4833682	0.80[CEU][hapmap];0.85[EUR][1000 genomes]
rs4833688	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs4833690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55930284	1.00[AFR][1000 genomes]
rs55962052	0.82[ASN][1000 genomes]
rs56004809	0.82[ASN][1000 genomes]
rs60983006	0.83[ASN][1000 genomes]
rs729934	0.81[CHB][hapmap]
rs73843656	0.82[ASN][1000 genomes]
rs73843658	0.82[ASN][1000 genomes]
rs885460	0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv4490	chr4:121782939-121801246	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121784200-121798000	Weak transcription	Fetal Intestine Small	intestine
2	chr4:121791400-121796400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr4:121791400-121803200	Weak transcription	Fetal Stomach	stomach
4	chr4:121792400-121800000	Weak transcription	Aorta	Aorta
5	chr4:121795200-121797400	Enhancers	Fetal Lung	lung
6	chr4:121795800-121796800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr4:121795800-121797400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:121796000-121796400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr4:121796000-121796600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr4:121796000-121796600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr4:121796000-121796600	Enhancers	Adipose Nuclei	Adipose
12	chr4:121796000-121796600	Enhancers	Pancreas	Pancrea
13	chr4:121796000-121796600	Enhancers	Right Ventricle	heart
14	chr4:121796000-121796600	Enhancers	NHDF-Ad	bronchial
15	chr4:121796000-121796800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr4:121796000-121796800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr4:121796000-121796800	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr4:121796000-121796800	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr4:121796000-121796800	Enhancers	Left Ventricle	heart
20	chr4:121796000-121796800	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr4:121796000-121797000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr4:121796000-121797400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr4:121796000-121797400	Enhancers	Ovary	ovary
24	chr4:121796200-121796400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr4:121796200-121797400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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