Variant report

Variant	rs4835566
Chromosome Location	chr4:150168038-150168039
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1438764	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1659231	0.84[ASN][1000 genomes]
rs3106919	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3106921	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3113461	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4311287	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs479939	0.80[ASN][1000 genomes]
rs4835157	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs484405	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs487115	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs487274	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs497432	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs500134	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs502591	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs503727	0.84[ASN][1000 genomes]
rs506969	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs507986	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs509589	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs510115	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs514767	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs518649	0.80[ASN][1000 genomes]
rs518652	0.80[ASN][1000 genomes]
rs526478	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs538844	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs541594	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs546978	0.80[ASN][1000 genomes]
rs547896	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs576403	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7679738	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs968903	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022438	chr4:150066349-150196711	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv595687	chr4:150070596-150178533	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv880248	chr4:150092178-150200706	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv880249	chr4:150156579-150280221	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150168000-150168200	Enhancers	Fetal Muscle Leg	muscle
2	chr4:150168000-150168800	Enhancers	Brain Substantia Nigra	brain

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