Variant report

Variant	rs4836341
Chromosome Location	chr5:127253377-127253378
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10052229	0.88[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10477678	0.88[CHB][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12654649	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17164505	0.88[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17164626	0.82[AMR][1000 genomes]
rs2176831	0.83[CHB][hapmap]
rs2263502	0.90[ASN][1000 genomes]
rs2409034	0.88[CHB][hapmap];0.88[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2409035	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2409036	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2681509	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4835933	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4836343	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56806325	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6865186	0.90[ASN][1000 genomes]
rs6898966	0.88[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs73331900	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7711172	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1021483	chr5:126927834-127304873	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127252400-127253400	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr5:127252400-127253800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr5:127252600-127253600	Enhancers	Primary B cells from peripheral blood	blood
4	chr5:127252600-127253600	Enhancers	GM12878-XiMat	blood
5	chr5:127252600-127253600	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr5:127252800-127253400	Weak transcription	Small Intestine	intestine
7	chr5:127252800-127253800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr5:127253000-127253400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr5:127253000-127253600	Enhancers	Primary hematopoietic stem cells	blood
10	chr5:127253000-127253600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr5:127253000-127253800	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr5:127253000-127255200	Weak transcription	Fetal Intestine Small	intestine
13	chr5:127253000-127266200	Weak transcription	Fetal Heart	heart
14	chr5:127253200-127253400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr5:127253200-127253400	Enhancers	Stomach Mucosa	stomach
16	chr5:127253200-127253600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr5:127253200-127253800	Enhancers	Duodenum Mucosa	Duodenum
18	chr5:127253200-127253800	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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