Variant report

Variant	rs7711172
Chromosome Location	chr5:127257406-127257407
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:127256203..127258500-chr5:127301825..127304365,2	MCF-7	breast:
2	chr5:127244288..127247153-chr5:127255192..127259002,3	MCF-7	breast:
3	chr5:127257196..127261867-chr5:127264373..127267767,5	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10052229	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10477678	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12173229	0.81[ASN][1000 genomes]
rs12173231	0.81[ASN][1000 genomes]
rs12654649	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1520246	0.90[CHD][hapmap];0.81[ASN][1000 genomes]
rs17164505	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2176831	0.95[CHB][hapmap];0.81[CHD][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs2263502	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2409034	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2409035	0.90[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs2409036	0.90[CHB][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs2681509	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4835933	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4836341	0.88[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs4836343	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4836345	0.90[CHD][hapmap];0.81[ASN][1000 genomes]
rs56806325	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6865186	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6898966	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73331900	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73333517	0.81[ASN][1000 genomes]
rs73333527	0.81[ASN][1000 genomes]
rs7713224	1.00[TSI][hapmap]
rs9327457	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1021483	chr5:126927834-127304873	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127253000-127266200	Weak transcription	Fetal Heart	heart
2	chr5:127253600-127259000	Weak transcription	GM12878-XiMat	blood
3	chr5:127253800-127261400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr5:127255800-127258200	Weak transcription	Stomach Mucosa	stomach
5	chr5:127256800-127259000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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