Variant report

Variant	rs4836356
Chromosome Location	chr5:127338410-127338411
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:127333339..127335775-chr5:127336111..127338824,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FBN2-2	chr5:127338041-127339371	NONHSAT103649
2	lnc-FBN2-2	chr5:127338221-127338514	ENSG00000245937.3
3	lnc-FBN2-1	chr5:127338387-127338514	ENSG00000245937

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13166597	0.84[ASN][1000 genomes]
rs61388269	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6862145	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs763880	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7722252	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1813981	chr5:127327649-127437401	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv3371571	chr5:127334053-127338651	Weak transcription Enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv599667	chr5:127336033-127347056	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv599668	chr5:127336033-127347815	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv1806594	chr5:127336033-127410767	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv1808488	chr5:127336033-127410767	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv1825228	chr5:127336033-127410767	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	esv1829119	chr5:127336033-127410767	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv599669	chr5:127336280-127348710	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127297800-127358400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr5:127324000-127350400	Weak transcription	HSMMtube	muscle
3	chr5:127324200-127342800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:127324400-127354800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr5:127324400-127358400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr5:127326400-127359400	Weak transcription	GM12878-XiMat	blood
7	chr5:127327800-127359400	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr5:127328200-127379800	Weak transcription	Esophagus	oesophagus
9	chr5:127329400-127351600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr5:127331800-127345000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr5:127332400-127388800	Weak transcription	Aorta	Aorta
12	chr5:127333600-127339400	Weak transcription	Right Ventricle	heart
13	chr5:127333600-127341600	Weak transcription	Psoas Muscle	Psoas
14	chr5:127333600-127354200	Weak transcription	Left Ventricle	heart
15	chr5:127333600-127358200	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr5:127333600-127358400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr5:127333600-127388800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr5:127333600-127417800	Weak transcription	Pancreas	Pancrea
19	chr5:127333800-127370800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr5:127334600-127394000	Weak transcription	Lung	lung
21	chr5:127335000-127355800	Weak transcription	Primary T cells from cord blood	blood
22	chr5:127335000-127397600	Weak transcription	NHDF-Ad	bronchial
23	chr5:127335800-127349400	Weak transcription	Fetal Intestine Small	intestine
24	chr5:127336000-127343200	Weak transcription	A549	lung
25	chr5:127336800-127375000	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr5:127337400-127338600	Enhancers	HMEC	breast
27	chr5:127337400-127339000	Strong transcription	Primary B cells from cord blood	blood
28	chr5:127337400-127339000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr5:127337400-127339000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr5:127337400-127339200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr5:127337600-127338600	Enhancers	NHEK	skin
32	chr5:127338000-127338600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr5:127338200-127338600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr5:127338200-127338600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr5:127338200-127338600	Enhancers	Ovary	ovary
36	chr5:127338200-127339000	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr5:127338400-127355800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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