Variant report

Variant	rs4836444
Chromosome Location	chr5:128456804-128456805
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:128448676..128453642-chr5:128454488..128460392,5	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10036277	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10071265	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1127827	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11960471	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2112697	0.81[AMR][1000 genomes]
rs2312251	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2430194	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2430195	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs257911	0.82[AMR][1000 genomes]
rs257912	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs257919	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3798115	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3798116	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3798117	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3798120	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3822830	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3822832	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58498861	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6595879	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6867600	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6868228	0.82[EUR][1000 genomes]
rs6871	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6881138	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6888909	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7714427	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830485	chr5:128298622-128480492	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv882842	chr5:128301971-128552706	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv599701	chr5:128328165-128773052	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv882847	chr5:128368505-128665719	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
5	nsv882848	chr5:128378225-128516629	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
6	nsv882849	chr5:128446692-128501738	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128431400-128457400	Weak transcription	Lung	lung
2	chr5:128434000-128458400	Weak transcription	Esophagus	oesophagus
3	chr5:128434400-128461800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr5:128434800-128461600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:128435200-128462200	Weak transcription	Pancreas	Pancrea
6	chr5:128443000-128459800	Weak transcription	Fetal Kidney	kidney
7	chr5:128444000-128460200	Weak transcription	Primary B cells from peripheral blood	blood
8	chr5:128444000-128461600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr5:128444000-128461600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr5:128444000-128462000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr5:128444000-128462400	Weak transcription	Gastric	stomach
12	chr5:128444600-128461600	Weak transcription	Fetal Intestine Small	intestine
13	chr5:128447400-128461600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr5:128448800-128461400	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr5:128448800-128461600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr5:128448800-128461600	Weak transcription	Dnd41	blood
17	chr5:128449000-128461400	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr5:128449400-128457000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr5:128449400-128461200	Weak transcription	Duodenum Mucosa	Duodenum
20	chr5:128449600-128460200	Weak transcription	Primary B cells from cord blood	blood
21	chr5:128452000-128460000	Weak transcription	Liver	Liver
22	chr5:128453000-128460600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr5:128453000-128461600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr5:128453200-128461600	Weak transcription	Fetal Intestine Large	intestine
25	chr5:128453200-128462600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr5:128453400-128460000	Weak transcription	Left Ventricle	heart
27	chr5:128453800-128461600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr5:128454000-128462200	Weak transcription	Fetal Stomach	stomach
29	chr5:128454200-128461600	Weak transcription	Adipose Nuclei	Adipose
30	chr5:128454200-128462000	Weak transcription	K562	blood
31	chr5:128454200-128462400	Weak transcription	Fetal Heart	heart
32	chr5:128454600-128457000	Weak transcription	Fetal Muscle Leg	muscle
33	chr5:128454800-128461600	Weak transcription	Primary T cells from cord blood	blood
34	chr5:128456400-128457200	Enhancers	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links