Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50518724..50520939-chr10:50521170..50522767,2	K562	blood:
2	chr10:50516625..50523164-chr10:50524827..50529904,7	K562	blood:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1001338	0.82[ASN][1000 genomes]
rs11101077	0.82[ASN][1000 genomes]
rs11816487	0.82[ASN][1000 genomes]
rs11817954	0.82[ASN][1000 genomes]
rs17176642	0.82[ASN][1000 genomes]
rs17176649	0.82[ASN][1000 genomes]
rs17176677	0.82[ASN][1000 genomes]
rs17774672	0.93[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17783271	0.82[ASN][1000 genomes]
rs2377968	0.82[ASN][1000 genomes]
rs2377970	0.82[ASN][1000 genomes]
rs2377971	0.82[ASN][1000 genomes]
rs2377972	0.82[ASN][1000 genomes]
rs2889804	0.82[ASN][1000 genomes]
rs4409751	0.82[ASN][1000 genomes]
rs4440951	0.82[ASN][1000 genomes]
rs4838379	0.82[ASN][1000 genomes]
rs4838490	0.82[ASN][1000 genomes]
rs4838491	0.82[ASN][1000 genomes]
rs6537521	0.82[ASN][1000 genomes]
rs6537522	0.82[ASN][1000 genomes]
rs7900404	0.93[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7900538	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7904928	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7906537	0.82[ASN][1000 genomes]
rs7919151	1.00[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv895376	chr10:50480164-50557211	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50513800-50522000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
2	chr10:50517200-50530600	Weak transcription	Pancreas	Pancrea
3	chr10:50517400-50526400	Weak transcription	K562	blood
4	chr10:50518400-50523200	Enhancers	Right Ventricle	heart
5	chr10:50518400-50523600	Enhancers	Left Ventricle	heart
6	chr10:50518600-50522200	Enhancers	Fetal Heart	heart
7	chr10:50519600-50523200	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr10:50520600-50526400	Weak transcription	Fetal Muscle Leg	muscle
9	chr10:50520800-50522600	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr10:50520800-50525200	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr10:50521000-50523200	Enhancers	Psoas Muscle	Psoas
12	chr10:50521200-50522000	Enhancers	Right Atrium	heart
13	chr10:50521600-50522000	Enhancers	Spleen	Spleen
14	chr10:50521800-50522000	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr10:50521800-50522200	Enhancers	Lung	lung
16	chr10:50521800-50523200	Enhancers	Monocytes-CD14+_RO01746	blood

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