Variant report

Variant	rs2377972
Chromosome Location	chr10:50497770-50497771
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50495318..50498897-chr10:50500217..50503088,3	MCF-7	breast:
2	chr10:50388067..50390396-chr10:50495469..50498227,2	K562	blood:
3	chr10:50237310..50239501-chr10:50496062..50498028,2	K562	blood:
4	chr10:50489012..50491295-chr10:50497060..50500818,3	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1001338	1.00[ASN][1000 genomes]
rs1004871	0.92[ASN][1000 genomes]
rs10745254	0.84[ASN][1000 genomes]
rs10776548	0.84[ASN][1000 genomes]
rs10857462	0.85[AFR][1000 genomes]
rs11101077	1.00[ASN][1000 genomes]
rs11812365	0.84[ASN][1000 genomes]
rs11814573	0.84[ASN][1000 genomes]
rs11816487	1.00[ASN][1000 genomes]
rs11817954	1.00[ASN][1000 genomes]
rs12764079	0.84[ASN][1000 genomes]
rs17009639	0.84[ASN][1000 genomes]
rs17176642	1.00[ASN][1000 genomes]
rs17176649	1.00[ASN][1000 genomes]
rs17176677	1.00[ASN][1000 genomes]
rs17774672	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17783271	1.00[ASN][1000 genomes]
rs2377968	1.00[ASN][1000 genomes]
rs2377970	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2377971	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28728361	0.92[ASN][1000 genomes]
rs2889804	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35852229	0.84[ASN][1000 genomes]
rs4409751	1.00[ASN][1000 genomes]
rs4440951	1.00[ASN][1000 genomes]
rs4838379	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4838484	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4838490	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4838491	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4838492	0.85[AFR][1000 genomes]
rs4838495	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6537521	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6537522	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7893248	0.91[AFR][1000 genomes]
rs7898878	0.92[ASN][1000 genomes]
rs7900404	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7900538	0.87[ASN][1000 genomes]
rs7904928	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7906537	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7914160	0.84[ASN][1000 genomes]
rs7919151	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv895376	chr10:50480164-50557211	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50491800-50498800	Weak transcription	Right Ventricle	heart
2	chr10:50494200-50498000	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr10:50494200-50499000	Enhancers	Fetal Muscle Leg	muscle
4	chr10:50495200-50503800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr10:50495800-50497800	Enhancers	Spleen	Spleen
6	chr10:50495800-50501000	Enhancers	Left Ventricle	heart
7	chr10:50496200-50498000	Enhancers	Psoas Muscle	Psoas
8	chr10:50496400-50498000	Enhancers	K562	blood
9	chr10:50496800-50503400	Weak transcription	Right Atrium	heart
10	chr10:50497000-50499400	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr10:50497200-50498600	Weak transcription	Adipose Nuclei	Adipose
12	chr10:50497600-50497800	Enhancers	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links