Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50467890..50470006-chr10:50498807..50500806,2	K562	blood:
2	chr10:50489012..50491295-chr10:50497060..50500818,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1001338	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11101077	0.92[ASN][1000 genomes]
rs11816487	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11817954	0.92[ASN][1000 genomes]
rs17176642	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17176649	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17176677	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17774672	1.00[JPT][hapmap]
rs17783193	0.80[EUR][1000 genomes]
rs17783271	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2377968	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2377970	0.92[ASN][1000 genomes]
rs2377971	0.92[ASN][1000 genomes]
rs2377972	0.92[ASN][1000 genomes]
rs28728361	0.85[ASN][1000 genomes]
rs2889804	0.92[ASN][1000 genomes]
rs4409751	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4440951	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4838379	0.92[ASN][1000 genomes]
rs4838484	0.85[ASN][1000 genomes]
rs4838490	0.92[ASN][1000 genomes]
rs4838491	0.92[ASN][1000 genomes]
rs4838495	1.00[JPT][hapmap]
rs6537521	0.92[ASN][1000 genomes]
rs6537522	0.92[ASN][1000 genomes]
rs7898878	0.85[ASN][1000 genomes]
rs7900404	1.00[JPT][hapmap]
rs7904928	1.00[JPT][hapmap]
rs7906537	0.92[ASN][1000 genomes]
rs7919151	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv895376	chr10:50480164-50557211	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50495200-50503800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr10:50495800-50501000	Enhancers	Left Ventricle	heart
3	chr10:50496800-50503400	Weak transcription	Right Atrium	heart
4	chr10:50497800-50500000	Weak transcription	Lung	lung
5	chr10:50497800-50500000	Weak transcription	Spleen	Spleen
6	chr10:50498000-50500200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr10:50498000-50504600	Weak transcription	K562	blood
8	chr10:50499000-50502600	Weak transcription	Fetal Muscle Leg	muscle
9	chr10:50499400-50500600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr10:50499400-50503000	Weak transcription	Right Ventricle	heart
11	chr10:50499600-50500000	Weak transcription	Psoas Muscle	Psoas

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