Variant report

Variant	rs12764079
Chromosome Location	chr10:50469205-50469206
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50350311..50352698-chr10:50467909..50469606,2	K562	blood:
2	chr10:50467890..50470006-chr10:50498807..50500806,2	K562	blood:
3	chr10:50467089..50469467-chr10:50508943..50510857,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1001338	0.84[ASN][1000 genomes]
rs10745254	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10776548	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101077	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11812365	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11812469	0.94[ASN][1000 genomes]
rs11814573	1.00[ASN][1000 genomes]
rs11816487	0.84[ASN][1000 genomes]
rs11817954	0.89[CEU][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17009639	1.00[ASN][1000 genomes]
rs17176642	0.84[ASN][1000 genomes]
rs17176649	0.84[ASN][1000 genomes]
rs17176677	0.84[ASN][1000 genomes]
rs17783193	0.94[ASN][1000 genomes]
rs17783271	0.84[ASN][1000 genomes]
rs2377968	0.84[ASN][1000 genomes]
rs2377970	0.84[ASN][1000 genomes]
rs2377971	0.84[ASN][1000 genomes]
rs2377972	0.84[ASN][1000 genomes]
rs28728361	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2889804	0.84[ASN][1000 genomes]
rs35852229	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4409751	0.84[ASN][1000 genomes]
rs4440951	0.84[ASN][1000 genomes]
rs4838379	0.84[ASN][1000 genomes]
rs4838484	0.88[ASN][1000 genomes]
rs4838490	0.84[ASN][1000 genomes]
rs4838491	0.84[ASN][1000 genomes]
rs6537521	0.84[ASN][1000 genomes]
rs6537522	0.84[ASN][1000 genomes]
rs7898878	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7906537	0.84[ASN][1000 genomes]
rs7914160	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919151	0.82[CHB][hapmap];1.00[CHD][hapmap];0.83[ASN][1000 genomes]
rs9888050	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50463000-50478800	Weak transcription	Right Atrium	heart
2	chr10:50463200-50470400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:50464200-50472000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr10:50467000-50470200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr10:50468800-50469400	Flanking Active TSS	K562	blood

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