Variant report

Variant	rs9888050
Chromosome Location	chr10:50466085-50466086
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10745254	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10776548	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11101077	0.83[EUR][1000 genomes]
rs11812365	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11812469	1.00[ASN][1000 genomes]
rs11814573	0.94[ASN][1000 genomes]
rs11817954	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs12764079	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17009639	0.94[ASN][1000 genomes]
rs17783193	1.00[ASN][1000 genomes]
rs28728361	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35852229	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4838484	0.83[ASN][1000 genomes]
rs7898878	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7914160	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7919151	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50460800-50467000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr10:50463000-50478800	Weak transcription	Right Atrium	heart
3	chr10:50463200-50466200	Enhancers	Primary hematopoietic stem cells	blood
4	chr10:50463200-50466400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:50463200-50470400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:50463600-50466400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr10:50464000-50468000	Weak transcription	K562	blood
8	chr10:50464200-50466200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr10:50464200-50472000	Weak transcription	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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