Variant report
| Variant | rs11814573 |
|---|---|
| Chromosome Location | chr10:50473832-50473833 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:50471365..50474414-chr10:50482796..50485458,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs1001338 | 0.84[ASN][1000 genomes] |
| rs10745254 | 1.00[ASN][1000 genomes] |
| rs10776548 | 1.00[ASN][1000 genomes] |
| rs11101077 | 0.84[ASN][1000 genomes] |
| rs11812365 | 1.00[ASN][1000 genomes] |
| rs11812469 | 0.94[ASN][1000 genomes] |
| rs11816487 | 0.84[ASN][1000 genomes] |
| rs11817954 | 0.84[ASN][1000 genomes] |
| rs12764079 | 1.00[ASN][1000 genomes] |
| rs17009639 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17176642 | 0.84[ASN][1000 genomes] |
| rs17176649 | 0.84[ASN][1000 genomes] |
| rs17176677 | 0.84[ASN][1000 genomes] |
| rs17783193 | 0.94[ASN][1000 genomes] |
| rs17783271 | 0.84[ASN][1000 genomes] |
| rs2377968 | 0.84[ASN][1000 genomes] |
| rs2377970 | 0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2377971 | 0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2377972 | 0.84[ASN][1000 genomes] |
| rs28728361 | 0.88[ASN][1000 genomes] |
| rs2889804 | 0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs35852229 | 1.00[ASN][1000 genomes] |
| rs4409751 | 0.84[ASN][1000 genomes] |
| rs4440951 | 0.84[ASN][1000 genomes] |
| rs4838375 | 0.90[AFR][1000 genomes] |
| rs4838379 | 0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4838484 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4838490 | 0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4838491 | 0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6537521 | 0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6537522 | 0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7898878 | 0.88[ASN][1000 genomes] |
| rs7906537 | 0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7914160 | 1.00[ASN][1000 genomes] |
| rs7919151 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[ASN][1000 genomes] |
| rs9888050 | 0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv895375 | chr10:50306386-51028871 | Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 33 gene(s) | inside rSNPs | diseases |
| 2 | nsv534410 | chr10:50317458-50826916 | Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 30 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:50463000-50478800 | Weak transcription | Right Atrium | heart |
| 2 | chr10:50470800-50480800 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
