Variant report

Variant	rs4839647
Chromosome Location	chr3:143325148-143325149
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10513212	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11915862	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13082568	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13084941	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1880662	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2030818	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34210617	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34225320	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34467389	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35152294	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35175368	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35629124	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6803829	0.87[AFR][1000 genomes]
rs73152833	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv829745	chr3:143278512-143405626	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3395179	chr3:143324870-143325400	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143297600-143339000	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr3:143300400-143336800	Weak transcription	Primary T cells from cord blood	blood
3	chr3:143318600-143332600	Weak transcription	Brain Substantia Nigra	brain
4	chr3:143321000-143327800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:143322200-143331200	Weak transcription	HMEC	breast
6	chr3:143324200-143340000	Weak transcription	Primary B cells from cord blood	blood
7	chr3:143324400-143327000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:143324400-143327000	Weak transcription	Ovary	ovary
9	chr3:143324400-143353800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr3:143324600-143326200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr3:143324600-143327000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:143324600-143331400	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr3:143324600-143331600	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr3:143324600-143336400	Weak transcription	Fetal Stomach	stomach
15	chr3:143324800-143327000	Weak transcription	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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