Variant report

Variant	rs10513212
Chromosome Location	chr3:143314564-143314565
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143313566..143315859-chr3:143319839..143322453,2	K562	blood:
2	chr3:143310510..143312815-chr3:143313075..143315988,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11915862	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13061355	0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs13064748	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs13074668	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs13074737	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs13076528	1.00[JPT][hapmap]
rs13076949	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs13082568	1.00[CEU][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13084941	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1405017	0.84[CHB][hapmap]
rs1525858	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs1525863	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs16853857	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs1880662	1.00[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2030818	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2289451	0.85[CHB][hapmap]
rs34210617	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34225320	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34467389	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35152294	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35175368	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35629124	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4839601	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs4839602	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs4839603	0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4839646	0.94[ASN][1000 genomes]
rs4839647	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73152833	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs746055	0.84[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv829745	chr3:143278512-143405626	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143294400-143317800	Weak transcription	Brain Substantia Nigra	brain
2	chr3:143297600-143320000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr3:143297600-143339000	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr3:143300400-143336800	Weak transcription	Primary T cells from cord blood	blood
5	chr3:143309800-143316000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:143310000-143316200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:143310200-143315600	Weak transcription	K562	blood
8	chr3:143311400-143316400	Weak transcription	Placenta	Placenta
9	chr3:143312600-143314800	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr3:143313200-143315000	Enhancers	Small Intestine	intestine
11	chr3:143313600-143321000	Weak transcription	Gastric	stomach
12	chr3:143313800-143317000	Weak transcription	Fetal Lung	lung
13	chr3:143314000-143314800	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr3:143314000-143315000	Enhancers	Primary B cells from cord blood	blood
15	chr3:143314000-143315000	Enhancers	Primary B cells from peripheral blood	blood
16	chr3:143314000-143315000	Enhancers	GM12878-XiMat	blood
17	chr3:143314000-143316400	Weak transcription	Fetal Brain Male	brain
18	chr3:143314000-143319600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:143314200-143314800	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr3:143314200-143314800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr3:143314200-143315000	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr3:143314200-143315800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr3:143314400-143314800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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