Variant report

Variant	rs13064748
Chromosome Location	chr3:143302725-143302726
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143301280..143303910-chr3:143308205..143310957,2	MCF-7	breast:
2	chr3:143296828..143299169-chr3:143301224..143303215,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10513212	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs11719391	0.94[ASN][1000 genomes]
rs12494880	0.80[EUR][1000 genomes]
rs13061355	0.90[JPT][hapmap]
rs13061398	1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13068070	1.00[CEU][hapmap];0.82[CHB][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13069703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13071089	1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13074668	0.85[CHB][hapmap];0.83[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13074737	0.84[CHB][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13076528	0.83[JPT][hapmap]
rs13076949	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13084941	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs13085205	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13090915	1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1405017	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1525858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1525862	1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1525863	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16853857	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17640925	1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1983467	1.00[CEU][hapmap];0.83[CHB][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2030818	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs2289451	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35417581	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35593863	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4839601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4839602	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4839603	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs4839642	1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4839646	0.81[ASN][1000 genomes]
rs71307941	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71307942	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs746055	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7642430	1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv829745	chr3:143278512-143405626	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143256000-143305600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr3:143270600-143304800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr3:143277400-143303600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr3:143277400-143310200	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr3:143284000-143306400	Weak transcription	Spleen	Spleen
6	chr3:143286800-143304400	Weak transcription	Primary B cells from peripheral blood	blood
7	chr3:143286800-143304800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:143287000-143305000	Weak transcription	Colon Smooth Muscle	Colon
9	chr3:143287400-143304800	Weak transcription	Fetal Intestine Small	intestine
10	chr3:143289400-143303000	Weak transcription	Fetal Stomach	stomach
11	chr3:143289600-143304600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr3:143290600-143304600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr3:143291000-143303600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr3:143291000-143304600	Weak transcription	Adipose Nuclei	Adipose
15	chr3:143291200-143305000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:143291600-143305000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr3:143292400-143305400	Weak transcription	Fetal Muscle Leg	muscle
18	chr3:143293000-143304800	Weak transcription	Aorta	Aorta
19	chr3:143294200-143304800	Weak transcription	Brain Hippocampus Middle	brain
20	chr3:143294400-143317800	Weak transcription	Brain Substantia Nigra	brain
21	chr3:143294800-143309400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr3:143296200-143313200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr3:143296800-143304000	Weak transcription	Ovary	ovary
24	chr3:143297400-143304600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr3:143297600-143304800	Weak transcription	Primary B cells from cord blood	blood
26	chr3:143297600-143320000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr3:143297600-143339000	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr3:143297800-143303800	Weak transcription	Fetal Muscle Trunk	muscle
29	chr3:143298600-143305600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr3:143298600-143312600	Weak transcription	Gastric	stomach
31	chr3:143298800-143304600	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr3:143298800-143304600	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr3:143300200-143304600	Weak transcription	Pancreas	Pancrea
34	chr3:143300400-143303200	Enhancers	GM12878-XiMat	blood
35	chr3:143300400-143336800	Weak transcription	Primary T cells from cord blood	blood
36	chr3:143301200-143304600	Weak transcription	Fetal Thymus	thymus
37	chr3:143301600-143304200	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr3:143301600-143304600	Weak transcription	Lung	lung
39	chr3:143301800-143304200	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr3:143302000-143306200	Weak transcription	Esophagus	oesophagus
41	chr3:143302000-143311200	Weak transcription	Placenta	Placenta
42	chr3:143302600-143305200	Enhancers	Fetal Lung	lung

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