Variant report

Variant	rs13076528
Chromosome Location	chr3:143354901-143354902
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10513212	1.00[JPT][hapmap]
rs13061355	0.89[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13064748	0.83[JPT][hapmap]
rs13074668	1.00[JPT][hapmap]
rs13074737	1.00[JPT][hapmap]
rs13076949	0.90[JPT][hapmap]
rs13082568	0.83[JPT][hapmap]
rs13084941	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1525858	0.90[JPT][hapmap]
rs1525863	0.83[JPT][hapmap]
rs16853857	0.90[JPT][hapmap]
rs1880662	0.81[JPT][hapmap]
rs2030818	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4839601	0.90[JPT][hapmap]
rs4839602	0.81[JPT][hapmap]
rs4839603	1.00[JPT][hapmap]
rs746055	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv829745	chr3:143278512-143405626	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143328200-143376200	Weak transcription	Ovary	ovary
2	chr3:143339200-143355200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr3:143346400-143363200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:143346600-143355600	Weak transcription	Primary T cells from cord blood	blood
5	chr3:143348200-143355400	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr3:143351600-143369800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr3:143352000-143355600	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr3:143354200-143373600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr3:143354200-143374000	Weak transcription	Esophagus	oesophagus
10	chr3:143354400-143355400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr3:143354400-143357400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:143354800-143355000	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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