Variant report

Variant	rs13074668
Chromosome Location	chr3:143306865-143306866
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143300021..143302674-chr3:143306084..143308707,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10513212	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11719391	0.81[ASN][1000 genomes]
rs13061355	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs13061398	0.81[EUR][1000 genomes]
rs13064748	0.85[CHB][hapmap];0.83[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13068070	0.87[EUR][1000 genomes]
rs13069703	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13071089	0.84[EUR][1000 genomes]
rs13074737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13076528	1.00[JPT][hapmap]
rs13076949	0.84[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13082568	0.83[JPT][hapmap]
rs13084941	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs13085205	0.87[EUR][1000 genomes]
rs13090915	0.84[EUR][1000 genomes]
rs1405017	0.84[CHB][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1525858	0.84[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1525862	0.86[EUR][1000 genomes]
rs1525863	0.85[CHB][hapmap];0.83[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16853857	0.84[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1880662	0.81[JPT][hapmap]
rs2030818	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2289451	0.85[CHB][hapmap];0.88[EUR][1000 genomes]
rs35417581	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35593863	0.87[EUR][1000 genomes]
rs4839601	0.84[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4839602	0.84[CHB][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4839603	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4839642	0.86[EUR][1000 genomes]
rs4839646	0.96[ASN][1000 genomes]
rs71307942	0.87[EUR][1000 genomes]
rs746055	0.84[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv829745	chr3:143278512-143405626	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143277400-143310200	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr3:143294400-143317800	Weak transcription	Brain Substantia Nigra	brain
3	chr3:143294800-143309400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:143296200-143313200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr3:143297600-143320000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr3:143297600-143339000	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr3:143298600-143312600	Weak transcription	Gastric	stomach
8	chr3:143300400-143336800	Weak transcription	Primary T cells from cord blood	blood
9	chr3:143302000-143311200	Weak transcription	Placenta	Placenta
10	chr3:143304600-143307200	Enhancers	Fetal Thymus	thymus
11	chr3:143305000-143310600	Weak transcription	Pancreas	Pancrea
12	chr3:143305200-143312600	Weak transcription	Fetal Lung	lung
13	chr3:143305800-143309400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:143305800-143309600	Weak transcription	Fetal Intestine Large	intestine
15	chr3:143305800-143309600	Weak transcription	Fetal Intestine Small	intestine
16	chr3:143306000-143307800	Enhancers	Dnd41	blood
17	chr3:143306000-143308200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr3:143306000-143309400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr3:143306000-143309400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr3:143306000-143310400	Weak transcription	Stomach Mucosa	stomach
21	chr3:143306000-143314000	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr3:143306200-143310600	Weak transcription	Small Intestine	intestine
23	chr3:143306400-143311000	Weak transcription	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links