Variant report

Variant	rs4841193
Chromosome Location	chr8:9513351-9513352
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10092117	0.84[AFR][1000 genomes]
rs11775845	0.83[AFR][1000 genomes]
rs13260943	0.84[AFR][1000 genomes]
rs4240627	0.89[AFR][1000 genomes]
rs4240628	0.89[AFR][1000 genomes]
rs4323472	0.88[AFR][1000 genomes]
rs4368981	0.95[AFR][1000 genomes]
rs4418342	0.93[AFR][1000 genomes]
rs4840430	0.91[AFR][1000 genomes]
rs4840433	0.81[AFR][1000 genomes]
rs4840435	0.93[AFR][1000 genomes]
rs4841187	0.89[AFR][1000 genomes]
rs6601360	0.91[AFR][1000 genomes]
rs6990558	0.82[AFR][1000 genomes]
rs7821143	0.95[AFR][1000 genomes]
rs7828963	0.89[AFR][1000 genomes]
rs7831760	0.84[AFR][1000 genomes]
rs7842294	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv497927	chr8:9097611-9544519	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9495800-9531000	Weak transcription	Gastric	stomach
2	chr8:9501600-9525400	Weak transcription	Thymus	Thymus
3	chr8:9501800-9528400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr8:9501800-9534400	Weak transcription	Fetal Heart	heart
5	chr8:9503000-9521200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr8:9504200-9529400	Weak transcription	Colon Smooth Muscle	Colon
7	chr8:9504800-9549600	Weak transcription	Pancreas	Pancrea
8	chr8:9506000-9521200	Weak transcription	Aorta	Aorta
9	chr8:9506400-9530200	Weak transcription	HepG2	liver
10	chr8:9507800-9529400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr8:9508400-9521200	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr8:9509000-9513400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:9509000-9514000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr8:9509200-9522400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr8:9509400-9513400	Weak transcription	HSMMtube	muscle
16	chr8:9509400-9513600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr8:9509400-9516000	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr8:9509400-9523000	Weak transcription	Brain Anterior Caudate	brain
19	chr8:9509400-9545000	Weak transcription	HSMM	muscle
20	chr8:9509600-9513600	Weak transcription	HMEC	breast
21	chr8:9509600-9529400	Weak transcription	Spleen	Spleen
22	chr8:9509600-9532000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr8:9510000-9528800	Weak transcription	Stomach Smooth Muscle	stomach
24	chr8:9510400-9563800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr8:9510600-9513600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr8:9510600-9526400	Weak transcription	NH-A	brain
27	chr8:9510800-9513400	ZNF genes & repeats	Fetal Intestine Small	intestine
28	chr8:9510800-9514000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr8:9510800-9523000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr8:9511000-9514000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr8:9511000-9514000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr8:9511000-9564200	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr8:9511400-9513600	ZNF genes & repeats	Fetal Lung	lung
34	chr8:9511400-9516800	Weak transcription	NHDF-Ad	bronchial
35	chr8:9511400-9520600	Weak transcription	A549	lung
36	chr8:9511400-9537000	Weak transcription	Left Ventricle	heart
37	chr8:9511600-9514600	Weak transcription	Brain Hippocampus Middle	brain
38	chr8:9511600-9521800	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr8:9511600-9522800	Weak transcription	Osteobl	bone
40	chr8:9511600-9554600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr8:9511800-9513400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr8:9511800-9516200	Weak transcription	Primary B cells from peripheral blood	blood
43	chr8:9512200-9513400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr8:9512400-9513600	ZNF genes & repeats	Fetal Stomach	stomach
45	chr8:9512400-9520600	Weak transcription	Primary T cells from cord blood	blood
46	chr8:9512400-9551400	Weak transcription	Dnd41	blood
47	chr8:9512600-9513400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr8:9512600-9537200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr8:9512600-9543800	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr8:9512800-9513400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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