Variant report

Variant	rs7831760
Chromosome Location	chr8:9503434-9503435
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:9494330..9496133-chr8:9501405..9503698,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10099135	1.00[EUR][1000 genomes]
rs10216350	0.82[AFR][1000 genomes]
rs11775845	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13260052	1.00[EUR][1000 genomes]
rs13260943	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13268996	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13270222	1.00[EUR][1000 genomes]
rs28538167	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4240627	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4240628	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4258007	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4323472	0.82[AFR][1000 genomes]
rs4368981	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4373520	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4418342	0.86[AFR][1000 genomes]
rs4613996	1.00[AMR][1000 genomes]
rs4625040	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4840430	0.84[AFR][1000 genomes]
rs4840433	0.87[AFR][1000 genomes]
rs4840435	0.86[AFR][1000 genomes]
rs4841187	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4841193	0.84[AFR][1000 genomes]
rs6601351	1.00[EUR][1000 genomes]
rs6601360	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6983459	1.00[EUR][1000 genomes]
rs6986254	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6990558	0.88[AFR][1000 genomes]
rs73535847	1.00[AMR][1000 genomes]
rs73537913	1.00[AMR][1000 genomes]
rs7821143	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7828963	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7829413	1.00[EUR][1000 genomes]
rs7840697	1.00[EUR][1000 genomes]
rs7842294	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9644703	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9650637	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv497927	chr8:9097611-9544519	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9474200-9509000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:9481000-9510800	Weak transcription	Primary B cells from cord blood	blood
3	chr8:9481200-9508400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr8:9484800-9504600	Weak transcription	Primary T cells from cord blood	blood
5	chr8:9485600-9510400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr8:9485600-9510400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:9485800-9508000	Weak transcription	Fetal Brain Female	brain
8	chr8:9487400-9509000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr8:9487800-9508400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr8:9491400-9504200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr8:9491400-9507800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr8:9491400-9509000	Weak transcription	HSMM	muscle
13	chr8:9492200-9508000	Weak transcription	NH-A	brain
14	chr8:9492400-9507800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:9493600-9509000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr8:9494400-9510400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr8:9494600-9510600	Weak transcription	Fetal Kidney	kidney
18	chr8:9495800-9531000	Weak transcription	Gastric	stomach
19	chr8:9498400-9505200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr8:9499800-9505000	Weak transcription	NHEK	skin
21	chr8:9499800-9510400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr8:9499800-9512400	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr8:9500200-9508000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr8:9500400-9510600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr8:9501200-9511200	Weak transcription	Right Atrium	heart
26	chr8:9501600-9504400	Weak transcription	Brain Hippocampus Middle	brain
27	chr8:9501600-9511000	Weak transcription	Ovary	ovary
28	chr8:9501600-9511400	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr8:9501600-9525400	Weak transcription	Thymus	Thymus
30	chr8:9501800-9510400	Weak transcription	Left Ventricle	heart
31	chr8:9501800-9528400	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr8:9501800-9534400	Weak transcription	Fetal Heart	heart
33	chr8:9502600-9504400	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr8:9502800-9503600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr8:9502800-9504200	Enhancers	GM12878-XiMat	blood
36	chr8:9502800-9511000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr8:9503000-9503600	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr8:9503000-9504600	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr8:9503000-9521200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr8:9503400-9503800	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links