Variant report

Variant	rs484406
Chromosome Location	chr6:92440906-92440907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EBF1	chr6:92440431-92441033	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000220340	TF binding region

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1761783	0.80[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs478120	0.90[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs478536	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs481555	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs482426	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs484288	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs488091	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs504879	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs506122	0.85[AMR][1000 genomes]
rs508629	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs511077	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs512950	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs520631	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs524271	0.90[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs525943	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs533135	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs540315	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs542101	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs548810	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs567888	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs570400	0.90[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs574724	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs578427	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs583239	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs599553	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs601701	1.00[CHB][hapmap];0.82[CHD][hapmap];0.81[JPT][hapmap];0.88[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs605570	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs605594	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs609383	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs615105	0.80[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.81[JPT][hapmap];0.84[MEX][hapmap];0.88[TSI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs633637	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs635450	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs636295	0.89[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs648475	0.90[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs650256	0.90[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs650804	0.90[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.81[JPT][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs652135	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs655846	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs658041	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs661782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs666390	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs673677	0.80[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs676663	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs678605	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71556396	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034981	chr6:92280070-92530848	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1018145	chr6:92328392-92951562	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv428491	chr6:92329694-92474678	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1067623	chr6:92383159-92939893	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv531366	chr6:92383159-92939893	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv1034219	chr6:92414885-92719927	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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