Variant report

Variant	rs652135
Chromosome Location	chr6:92405384-92405385
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1761783	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs478120	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs478536	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs481555	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs482426	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs484288	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs484406	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs488091	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs504879	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs506122	0.96[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs508629	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs511077	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs512950	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs520631	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs524271	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs525943	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs533135	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs542101	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs548810	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs567888	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs570258	0.85[EUR][1000 genomes]
rs571387	0.84[EUR][1000 genomes]
rs574724	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs578427	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs583239	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs599553	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs601701	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs605570	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs609383	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs614298	0.85[EUR][1000 genomes]
rs615105	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs633637	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs635450	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs636295	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs648475	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs650256	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs650804	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs655846	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs658041	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs666390	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs673677	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs676663	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs678605	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71556396	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017467	chr6:91802015-92417554	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
2	nsv538360	chr6:91802015-92417554	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1034981	chr6:92280070-92530848	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1018145	chr6:92328392-92951562	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv428491	chr6:92329694-92474678	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1028736	chr6:92362109-92423792	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
7	nsv1067623	chr6:92383159-92939893	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv531366	chr6:92383159-92939893	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:92404400-92405800	Weak transcription	HMEC	breast
2	chr6:92404600-92413200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:92404800-92406000	Weak transcription	NHEK	skin

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