Variant report

Variant	rs4844525
Chromosome Location	chr1:210565337-210565338
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:210565121..210568359-chr1:210572172..210574144,3	K562	blood:
2	chr1:210545087..210549192-chr1:210563139..210569683,17	K562	blood:
3	chr1:210546871..210548760-chr1:210563708..210566553,2	MCF-7	breast:
4	chr1:210557280..210560870-chr1:210565323..210568970,3	MCF-7	breast:
5	chr1:210544279..210546668-chr1:210563649..210566448,3	MCF-7	breast:
6	chr1:210544272..210548756-chr1:210564899..210569569,12	MCF-7	breast:
7	chr1:210560782..210563745-chr1:210565066..210566906,2	MCF-7	breast:
8	chr1:210526031..210527804-chr1:210564982..210566537,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1111020	0.81[EUR][1000 genomes]
rs11119482	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2073039	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2076516	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2143441	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3765863	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4844526	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4845011	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6540592	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6540593	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6663590	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6685791	0.95[EUR][1000 genomes]
rs6693035	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6693338	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210529600-210586000	Weak transcription	Pancreas	Pancrea
2	chr1:210538400-210565600	Weak transcription	Esophagus	oesophagus
3	chr1:210546600-210566200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:210548600-210566400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:210551200-210566600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:210551400-210586000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr1:210559000-210584400	Weak transcription	Fetal Stomach	stomach
8	chr1:210559200-210565400	Weak transcription	HSMM	muscle
9	chr1:210560200-210566800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:210562400-210566400	Weak transcription	Left Ventricle	heart
11	chr1:210563400-210569800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:210564800-210565800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr1:210565200-210569600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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