Variant report

Variant	rs4844526
Chromosome Location	chr1:210574267-210574268
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:210544698..210555948-chr1:210566953..210584306,65	MCF-7	breast:
2	chr1:210547388..210548568-chr1:210573512..210574569,14	MCF-7	breast:
3	chr1:210566055..210568677-chr1:210572512..210575312,3	MCF-7	breast:
4	chr1:210484126..210484677-chr1:210573695..210574545,2	MCF-7	breast:
5	chr1:210572425..210575594-chr1:210579116..210581300,3	K562	blood:
6	chr1:210573314..210577563-chr1:210578533..210582759,4	K562	blood:
7	chr1:210533808..210534781-chr1:210574075..210574592,2	K562	blood:
8	chr1:210549868..210552421-chr1:210574134..210576852,2	K562	blood:
9	chr1:210572567..210575023-chr1:211309974..211312335,2	MCF-7	breast:
10	chr1:210533956..210534790-chr1:210573565..210574523,4	MCF-7	breast:
11	chr1:210573776..210575336-chr1:210575671..210578485,2	MCF-7	breast:
12	chr1:210316574..210317598-chr1:210573631..210575041,4	K562	blood:
13	chr1:210544801..210552702-chr1:210569747..210575327,18	MCF-7	breast:
14	chr1:210547837..210548362-chr1:210573678..210574548,3	MCF-7	breast:
15	chr1:210551526..210553574-chr1:210572140..210575060,2	K562	blood:
16	chr1:210546689..210549252-chr1:210570902..210574338,5	K562	blood:
17	chr1:210533311..210536589-chr1:210572457..210575177,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000200972	Chromatin interaction
ENSG00000054392	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11119482	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2073039	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2076516	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2143441	0.94[EUR][1000 genomes]
rs3765863	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4844525	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4845011	0.90[EUR][1000 genomes]
rs6540592	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6540593	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6663590	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6685791	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6693035	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6693338	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210529600-210586000	Weak transcription	Pancreas	Pancrea
2	chr1:210551400-210586000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr1:210559000-210584400	Weak transcription	Fetal Stomach	stomach
4	chr1:210566800-210586200	Weak transcription	Lung	lung
5	chr1:210567400-210617200	Weak transcription	Left Ventricle	heart
6	chr1:210570200-210594000	Weak transcription	Fetal Lung	lung
7	chr1:210570400-210574400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:210571200-210586200	Weak transcription	Colonic Mucosa	Colon
9	chr1:210571200-210592400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr1:210571400-210591400	Weak transcription	Ovary	ovary
11	chr1:210571400-210641000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr1:210573200-210574400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:210573400-210574400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:210573400-210574400	Enhancers	HSMM	muscle
15	chr1:210573400-210574600	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr1:210573600-210574400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr1:210573600-210574400	Enhancers	Right Ventricle	heart
18	chr1:210573600-210592400	Weak transcription	Fetal Intestine Small	intestine
19	chr1:210573800-210574400	Enhancers	H1 Cell Line	embryonic stem cell
20	chr1:210573800-210574400	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr1:210573800-210574400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr1:210573800-210574400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr1:210573800-210574400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr1:210573800-210574400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr1:210573800-210574400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr1:210573800-210574400	Enhancers	HSMMtube	muscle
27	chr1:210573800-210574400	Enhancers	Osteobl	bone
28	chr1:210573800-210592200	Weak transcription	Primary T cells from cord blood	blood
29	chr1:210573800-210594400	Weak transcription	Spleen	Spleen
30	chr1:210574000-210574400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr1:210574000-210574400	Enhancers	Colon Smooth Muscle	Colon
32	chr1:210574000-210578400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr1:210574000-210579200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr1:210574000-210586600	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr1:210574200-210574400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr1:210574200-210574400	Enhancers	Stomach Smooth Muscle	stomach
37	chr1:210574200-210574600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
38	chr1:210574200-210578200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr1:210574200-210581000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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