Variant report

Variant	rs4845710
Chromosome Location	chr1:155033014-155033015
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:154941423..154943081-chr1:155031851..155033563,2	K562	blood:
2	chr1:154908713..154910557-chr1:155032303..155034913,2	MCF-7	breast:
3	chr1:154971124..154975632-chr1:155030158..155034057,4	K562	blood:
4	chr1:154927481..154932587-chr1:155031885..155037682,6	MCF-7	breast:
5	chr1:154954995..154957333-chr1:155031077..155033071,2	MCF-7	breast:
6	chr1:154969072..154977664-chr1:155030052..155039846,22	MCF-7	breast:

Variant related genes	Relation type
ENSG00000160685	Chromatin interaction
ENSG00000160688	Chromatin interaction
ENSG00000163344	Chromatin interaction
ENSG00000163346	Chromatin interaction
ENSG00000160691	Chromatin interaction
ENSG00000270361	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1218557	1.00[ASN][1000 genomes]
rs1218558	1.00[ASN][1000 genomes]
rs1218562	1.00[ASN][1000 genomes]
rs1218574	1.00[ASN][1000 genomes]
rs72702270	1.00[ASN][1000 genomes]
rs72702284	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532579	chr1:154548165-155262692	Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	575 gene(s)	inside rSNPs	diseases
2	nsv872454	chr1:154904840-155079477	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases
3	esv1823746	chr1:154965207-155231904	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
4	nsv872455	chr1:155003954-155106550	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
5	nsv872456	chr1:155028692-155035611	Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155025000-155034200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:155025200-155034000	Weak transcription	NH-A	brain
3	chr1:155025200-155034200	Weak transcription	Psoas Muscle	Psoas
4	chr1:155025200-155034200	Weak transcription	NHDF-Ad	bronchial
5	chr1:155025400-155034000	Weak transcription	GM12878-XiMat	blood
6	chr1:155025600-155033800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr1:155025600-155034200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr1:155025800-155033600	Strong transcription	A549	lung
9	chr1:155025800-155034000	Strong transcription	Brain Cingulate Gyrus	brain
10	chr1:155026000-155033200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr1:155026000-155033600	Strong transcription	Brain Substantia Nigra	brain
12	chr1:155026000-155033800	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr1:155026000-155033800	Strong transcription	Fetal Stomach	stomach
14	chr1:155026000-155034200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr1:155026000-155034200	Weak transcription	Right Atrium	heart
16	chr1:155026200-155033200	Strong transcription	Duodenum Mucosa	Duodenum
17	chr1:155026200-155033400	Strong transcription	HMEC	breast
18	chr1:155026200-155033600	Strong transcription	Cortex derived primary cultured neurospheres	brain
19	chr1:155026200-155033600	Strong transcription	Rectal Mucosa Donor 31	rectum
20	chr1:155026200-155033800	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr1:155026200-155033800	Weak transcription	Primary B cells from cord blood	blood
22	chr1:155026200-155033800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr1:155026200-155034000	Weak transcription	Fetal Lung	lung
24	chr1:155026200-155034200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr1:155026400-155033200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr1:155026400-155033400	Strong transcription	Gastric	stomach
27	chr1:155026400-155033400	Strong transcription	Stomach Smooth Muscle	stomach
28	chr1:155026400-155033600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr1:155026400-155033600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr1:155026400-155033600	Strong transcription	Brain Anterior Caudate	brain
31	chr1:155026400-155033600	Strong transcription	Ovary	ovary
32	chr1:155026400-155033600	Strong transcription	Sigmoid Colon	Sigmoid Colon
33	chr1:155026400-155033800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr1:155026400-155033800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr1:155026400-155033800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr1:155026400-155034000	Strong transcription	Lung	lung
37	chr1:155026600-155033200	Strong transcription	Fetal Muscle Trunk	muscle
38	chr1:155026600-155033400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr1:155026600-155033400	Strong transcription	Skeletal Muscle Male	skeletal muscle
40	chr1:155026600-155033600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr1:155026600-155033800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr1:155026600-155033800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr1:155026600-155033800	Strong transcription	Brain Hippocampus Middle	brain
44	chr1:155026600-155033800	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr1:155026600-155033800	Strong transcription	NHEK	skin
46	chr1:155026800-155033400	Strong transcription	Adipose Nuclei	Adipose
47	chr1:155026800-155033400	Strong transcription	Left Ventricle	heart
48	chr1:155026800-155033400	Strong transcription	Spleen	Spleen
49	chr1:155026800-155033600	Strong transcription	Fetal Muscle Leg	muscle
50	chr1:155026800-155033800	Strong transcription	Primary neutrophils fromperipheralblood	blood

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