Variant report

Variant	rs72702284
Chromosome Location	chr1:155079718-155079719
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000163463	Chromatin interaction
ENSG00000202027	Chromatin interaction
ENSG00000163462	Chromatin interaction
ENSG00000143590	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1218557	1.00[ASN][1000 genomes]
rs1218558	1.00[ASN][1000 genomes]
rs1218562	1.00[ASN][1000 genomes]
rs4845710	1.00[ASN][1000 genomes]
rs72702270	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532579	chr1:154548165-155262692	Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	575 gene(s)	inside rSNPs	diseases
2	esv1823746	chr1:154965207-155231904	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
3	nsv872455	chr1:155003954-155106550	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155075400-155080000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr1:155077200-155081800	Enhancers	Fetal Intestine Small	intestine
3	chr1:155077400-155080200	Weak transcription	Colonic Mucosa	Colon
4	chr1:155077400-155081400	Enhancers	Fetal Intestine Large	intestine
5	chr1:155078600-155079800	Weak transcription	Gastric	stomach
6	chr1:155078600-155080000	Weak transcription	K562	blood
7	chr1:155078600-155080200	Weak transcription	Lung	lung
8	chr1:155078600-155080800	Weak transcription	Placenta	Placenta
9	chr1:155078600-155090200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr1:155078600-155098400	Weak transcription	Right Atrium	heart
11	chr1:155079400-155079800	Flanking Active TSS	Liver	Liver
12	chr1:155079400-155080400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:155079600-155080400	Flanking Active TSS	HepG2	liver
14	chr1:155079600-155080600	Enhancers	Stomach Mucosa	stomach
15	chr1:155079600-155081000	Enhancers	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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