Variant report
| Variant | rs4845775 |
|---|---|
| Chromosome Location | chr1:152447086-152447087 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:152440552..152443161-chr1:152444517..152447318,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs10888488 | 0.82[ASN][1000 genomes] |
| rs11205002 | 0.82[ASN][1000 genomes] |
| rs11205003 | 0.83[ASN][1000 genomes] |
| rs11205004 | 0.89[ASN][1000 genomes] |
| rs11205008 | 0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11578573 | 0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11579024 | 0.90[ASN][1000 genomes] |
| rs11579085 | 0.90[ASN][1000 genomes] |
| rs11803629 | 0.89[ASN][1000 genomes] |
| rs12069640 | 0.88[ASN][1000 genomes] |
| rs12125681 | 0.89[ASN][1000 genomes] |
| rs12749879 | 0.84[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs16834090 | 0.94[ASN][1000 genomes] |
| rs1885527 | 0.92[ASN][1000 genomes] |
| rs1885528 | 0.92[ASN][1000 genomes] |
| rs1885529 | 0.90[ASN][1000 genomes] |
| rs1923498 | 0.83[ASN][1000 genomes] |
| rs1923499 | 0.82[ASN][1000 genomes] |
| rs4557976 | 0.86[ASN][1000 genomes] |
| rs4636462 | 0.89[ASN][1000 genomes] |
| rs4845433 | 0.83[ASN][1000 genomes] |
| rs4845435 | 0.87[ASN][1000 genomes] |
| rs4845436 | 0.93[ASN][1000 genomes] |
| rs4845438 | 0.94[ASN][1000 genomes] |
| rs4845440 | 0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4845767 | 0.86[ASN][1000 genomes] |
| rs4845768 | 0.89[ASN][1000 genomes] |
| rs4845769 | 0.87[ASN][1000 genomes] |
| rs4845770 | 0.92[ASN][1000 genomes] |
| rs4845771 | 0.94[ASN][1000 genomes] |
| rs4991216 | 0.92[ASN][1000 genomes] |
| rs499997 | 0.90[ASN][1000 genomes] |
| rs556124 | 0.90[ASN][1000 genomes] |
| rs6587674 | 0.94[ASN][1000 genomes] |
| rs6695950 | 0.82[ASN][1000 genomes] |
| rs7529997 | 0.94[ASN][1000 genomes] |
| rs7548609 | 0.94[ASN][1000 genomes] |
| rs986903 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014095 | chr1:152104486-152454591 | Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv916016 | chr1:152337775-152590520 | Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 3 | nsv872443 | chr1:152400055-152459747 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:152446000-152447400 | Enhancers | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr1:152446200-152447200 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
