Variant report

Variant	rs4846711
Chromosome Location	chr1:221514767-221514768
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10779432	0.86[AFR][1000 genomes]
rs10863606	0.86[AFR][1000 genomes]
rs10863608	0.86[AFR][1000 genomes]
rs10863609	0.86[AFR][1000 genomes]
rs12411237	0.86[AFR][1000 genomes]
rs3131540	0.86[AFR][1000 genomes]
rs4399165	0.86[AFR][1000 genomes]
rs4518911	0.86[AFR][1000 genomes]
rs4846713	0.86[AFR][1000 genomes]
rs6541194	0.86[AFR][1000 genomes]
rs6541195	0.86[AFR][1000 genomes]
rs7555947	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	esv274994	chr1:221512623-221519858	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221510800-221516800	Weak transcription	NHDF-Ad	bronchial
2	chr1:221511200-221516200	Weak transcription	Fetal Lung	lung
3	chr1:221511400-221516600	Weak transcription	Hela-S3	cervix
4	chr1:221514400-221517000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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