Variant report

Variant	rs7555947
Chromosome Location	chr1:221507141-221507142
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10779432	1.00[AFR][1000 genomes]
rs10863606	1.00[AFR][1000 genomes]
rs10863608	1.00[AFR][1000 genomes]
rs10863609	1.00[AFR][1000 genomes]
rs12411237	1.00[AFR][1000 genomes]
rs3101202	0.84[AFR][1000 genomes]
rs3131540	1.00[AFR][1000 genomes]
rs3131541	0.86[AFR][1000 genomes]
rs4399165	1.00[AFR][1000 genomes]
rs4518911	1.00[AFR][1000 genomes]
rs4846711	0.86[AFR][1000 genomes]
rs4846713	1.00[AFR][1000 genomes]
rs6541194	1.00[AFR][1000 genomes]
rs6541195	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221506200-221507200	Enhancers	Fetal Lung	lung
2	chr1:221506200-221509200	Enhancers	Lung	lung
3	chr1:221506400-221507200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:221506400-221509000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr1:221506400-221509800	Enhancers	Fetal Stomach	stomach
6	chr1:221506600-221508200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr1:221506600-221509600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr1:221506800-221507400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr1:221507000-221507200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:221507000-221508000	Enhancers	Brain Hippocampus Middle	brain
11	chr1:221507000-221508000	Enhancers	Brain Substantia Nigra	brain
12	chr1:221507000-221508000	Enhancers	Hela-S3	cervix
13	chr1:221507000-221509200	Enhancers	Primary hematopoietic stem cells	blood
14	chr1:221507000-221510000	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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