Variant report

Variant	rs4848916
Chromosome Location	chr2:124922552-124922553
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10496623	1.00[ASW][hapmap]
rs10496625	1.00[ASW][hapmap]
rs12615559	0.87[CEU][hapmap]
rs12622072	1.00[ASW][hapmap]
rs1529294	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1583716	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17010809	1.00[ASW][hapmap]
rs17010817	1.00[ASW][hapmap]
rs17010934	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap]
rs2579821	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs2579824	1.00[CEU][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap]
rs2699381	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];1.00[LWK][hapmap];0.97[ASN][1000 genomes]
rs55705177	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72845542	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531408	chr2:124727329-125011247	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:124920600-124922600	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr2:124920800-124923800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:124921800-124923200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:124922000-124924000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
5	chr2:124922000-124925000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr2:124922200-124922600	Enhancers	Gastric	stomach
7	chr2:124922400-124923000	Enhancers	Stomach Smooth Muscle	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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