Variant report

Variant	rs4853512
Chromosome Location	chr2:191478211-191478212
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10451566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12473460	0.80[CHB][hapmap];0.80[JPT][hapmap]
rs12613768	0.88[CEU][hapmap]
rs12615925	0.98[ASN][1000 genomes]
rs12621493	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12987797	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs13028201	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs13029743	0.94[ASN][1000 genomes]
rs4853720	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4853721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6434400	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6711006	0.80[CHB][hapmap];0.80[JPT][hapmap]
rs72917118	0.84[AMR][1000 genomes]
rs7608180	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834492	chr2:191438864-191646621	Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191456600-191491800	Weak transcription	Aorta	Aorta
2	chr2:191470400-191480400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:191475400-191492400	Weak transcription	Fetal Brain Male	brain
4	chr2:191476800-191482600	Weak transcription	A549	lung
5	chr2:191477000-191491400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr2:191478200-191482400	Weak transcription	Stomach Smooth Muscle	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links