Variant report

Variant	rs12615925
Chromosome Location	chr2:191437902-191437903
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:191413004..191414624-chr2:191437480..191439283,2	MCF-7	breast:
2	chr2:191433891..191435681-chr2:191435734..191438832,3	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10451566	0.98[ASN][1000 genomes]
rs11897266	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12464923	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12472240	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12473460	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12613365	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12619125	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12619560	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12621493	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12622496	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12693576	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12987797	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13013848	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13019278	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13028201	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13029743	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34274882	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34417560	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34825614	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36055519	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3811609	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4073873	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4129081	0.86[EUR][1000 genomes]
rs4264585	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4324342	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4853508	0.87[EUR][1000 genomes]
rs4853512	0.98[ASN][1000 genomes]
rs4853709	0.82[EUR][1000 genomes]
rs4853718	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4853720	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4853721	0.98[ASN][1000 genomes]
rs55754136	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55987230	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6434400	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6707773	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6711006	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72911109	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7560318	0.87[EUR][1000 genomes]
rs7601745	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7608180	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191411000-191443000	Weak transcription	Right Atrium	heart
2	chr2:191427200-191443000	Weak transcription	Right Ventricle	heart
3	chr2:191427600-191441400	Weak transcription	Aorta	Aorta
4	chr2:191433000-191440600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr2:191434600-191439400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:191434600-191439400	Enhancers	HMEC	breast
7	chr2:191434600-191439400	Enhancers	NHEK	skin
8	chr2:191434800-191438400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr2:191435000-191438400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr2:191435000-191439400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr2:191435400-191438400	Weak transcription	Esophagus	oesophagus
12	chr2:191435400-191443000	Weak transcription	Left Ventricle	heart
13	chr2:191435600-191438000	Weak transcription	Colon Smooth Muscle	Colon
14	chr2:191436200-191439400	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr2:191436400-191439200	Enhancers	Fetal Stomach	stomach
16	chr2:191436400-191439200	Enhancers	Hela-S3	cervix
17	chr2:191436400-191439400	Enhancers	A549	lung
18	chr2:191436600-191438400	Enhancers	Fetal Intestine Small	intestine
19	chr2:191436800-191439800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr2:191436800-191442800	Weak transcription	Brain Hippocampus Middle	brain
21	chr2:191436800-191443000	Weak transcription	Brain Anterior Caudate	brain
22	chr2:191436800-191457000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr2:191437200-191438000	Weak transcription	Stomach Mucosa	stomach
24	chr2:191437200-191438400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr2:191437200-191438400	Enhancers	Fetal Lung	lung
26	chr2:191437400-191442800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr2:191437800-191438400	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr2:191437800-191438400	Enhancers	Small Intestine	intestine
29	chr2:191437800-191438600	Enhancers	Rectal Smooth Muscle	rectum
30	chr2:191437800-191438600	Enhancers	K562	blood
31	chr2:191437800-191439400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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